getGenotypes: Retrieve genotypes from a MagicGen object
In tavareshugo/MagicHelpR: QTL mapping in Arabidopsis MAGIC lines
Description
Usage
Arguments
Value
Description
This function can be used to extract the genotypes for all the MAGIC lines in
a MagicGen or MagicGenPhen object. The genotypes can either be the SNP genotypes
or the probability matrix of genotype ancestry for each MAGIC line.
Usage
1
2
3
4
getGenotypes(x, type = c("probability", "allele"))
## S4 method for signature 'MagicGen'
getGenotypes(x, type = c("probability", "allele"))
Arguments
x
an object of class MagicGen
type
which type of genotype to retrieve.
Value
genotypes from MagicGenPhen object
tavareshugo/MagicHelpR documentation built on May 4, 2020, 3:01 p.m.
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Description Usage Arguments Value
Description
This function can be used to extract the genotypes for all the MAGIC lines in a MagicGen or MagicGenPhen object. The genotypes can either be the SNP genotypes or the probability matrix of genotype ancestry for each MAGIC line.
Usage
1 2 3 4 | getGenotypes(x, type = c("probability", "allele"))
## S4 method for signature 'MagicGen'
getGenotypes(x, type = c("probability", "allele"))
|
Arguments
x |
an object of class MagicGen |
type |
which type of genotype to retrieve. |
Value
genotypes from MagicGenPhen object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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