addPhenotypes | Add phenotypes to 'MagicGen' object |
class-MagicGen | MagicGen class |
downloadArabMagic | Download Arabidopsis MAGIC genotypes |
estimateFounderEffect | Estimate founder QTL effect |
getFounderGenotypes | Retrieve SNP genotypes of MAGIC founders from a MagicGen... |
getGenotypes | Retrieve genotypes from a MagicGen object |
getMarkers | Retrieve markers from a MagicGen object |
getPhenotypes | Retrieve phenotypes from a MagicGenPhen object |
inferMagicFounder | Infer most likely founder for a given SNP |
magicFounderReconstruct | Calculate MAGIC founder genotype probabilities |
magicQtlScan | Make a QTL scan - deprecated function |
scanQtl | Make a QTL scan |
tidyArabMagic | Tidy Arabidopsis MAGIC genotypes |
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