Files in tbradley1013/KEGGerator
Identify genomic functionality with KEGG
.Rbuildignore
.gitignore
DESCRIPTION
KEGGerator.Rproj
NAMESPACE
R/datasets.R
R/filter-orgs.R
R/genome-funs.R
R/get-enzymes.R
R/get-module.R
R/get-org-id.R
R/get-orthologies.R
R/keggerator-class.R
R/keggtap-class.R
R/orgs-tbl.R
R/pathway-links.R
R/phyloseq-to-tibbles.R
R/plot-genome-function.R
R/uncertainty.R
R/utils.R
README.md
README.rmd
data-raw/kegg-datasets.R
data-raw/nit-fun-data.R
data-raw/nit-orth-funcs.csv
data/kegg_enzymes.rda
data/kegg_modules.rda
data/kegg_orthologies.rda
data/kegg_pathways.rda
data/nitrogen_metabolism_fun_groups.rda
data/nitrogen_metabolism_orth_fun.rda
man/as_keggerator.Rd
man/filter_orgs.Rd
man/genomic_func_heatmap.Rd
man/get_datasets.Rd
man/get_enzyme_modules.Rd
man/get_enzymes.Rd
man/get_org_ids.Rd
man/get_orthologies.Rd
man/get_orthology_modules.Rd
man/get_pathway_enzymes.Rd
man/get_pathway_modules.Rd
man/get_pathway_orthologies.Rd
man/has_complete_function.Rd
man/has_specific_function.Rd
man/is_kegg_tbl.Rd
man/keggerator.Rd
man/keggerator_uncertainty.Rd
man/keggtap.Rd
man/orgs_tibble.Rd
man/otu_ref.Rd
man/otu_tibble.Rd
man/reexports.Rd
man/sam_tibble.Rd
man/tax_tibble.Rd
tests/testthat.R
tests/testthat/test-ps-to-tibble.R
vignettes/.gitignore
vignettes/intro-to-keggerator.Rmd
workflow-keggerator.rds
workflow.R
