as_keggerator | Convert an object into class keggerator |
filter_orgs | Filter OTUs and kegg organisms |
genomic_func_heatmap | Genomic Functional Heatmap |
get_datasets | Get Updated KEGG datasets |
get_enzyme_modules | Query all modules related to each enzyme in a dataset |
get_enzymes | Query all enzymes related to each genome in the dataset |
get_org_ids | retrieve KEGG genome id for all organims |
get_orthologies | Query all orthologies related to each genome in the dataset |
get_orthology_modules | Query all modules related to each orthology in a dataset |
get_pathway_enzymes | Query all enzymes associated with a given pathway |
get_pathway_modules | Query all modules associated with a given pathway |
get_pathway_orthologies | Query all orthologies associated with a given pathway |
has_complete_function | returns genomes that have all the functions in specified... |
has_specific_function | find all genomes that complete all of the desired functions |
is_kegg_tbl | Check whether KEGGerator datasets have the correct class |
keggerator | A keggerator object |
keggerator_uncertainty | Calculate total uncertainty |
keggtap | Create a keggtap object |
orgs_tibble | extract organisms from tax table or tax tibble |
otu_ref | Create a otu reference table |
otu_tibble | Convert OTU table to tibble |
reexports | Objects exported from other packages |
sam_tibble | Convert sam_data to tibble |
tax_tibble | Convert tax table to tibble |
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