Man pages for tbradley1013/KEGGerator
Identify genomic functionality with KEGG

filter_genome_by_pathwayFilter out genomes by pathway
genomes_tibbleextract genomes from tax table or tax tibble
genomic_func_heatmapGenomic Functional Heatmap
get_enzyme_modulesQuery all modules related to each enzyme in a dataset
get_genome_enzymesQuery all enzymes related to each genome in the dataset
get_genome_idretrieve KEGG genome id for all genomes
get_genome_orthologiesQuery all orthologies related to each genome in the dataset
get_orthology_modulesQuery all modules related to each orthology in a dataset
get_pathway_enzymesQuery all enzymes associated with a given pathway
get_pathway_modulesQuery all modules associated with a given pathway
get_pathway_orthologiesQuery all orthologies associated with a given pathway
has_complete_functionreturns genomes that have all the functions in specified...
has_specific_functionfind all genomes that complete all of the desired functions
otu_tibbleConvert OTU table to tibble
reexportsObjects exported from other packages
sam_tibbleConvert sam_data to tibble
tax_tibbleConvert tax table to tibble
tbradley1013/KEGGerator documentation built on Nov. 12, 2018, 3:56 a.m.