Description Usage Arguments Author(s)

View source: R/multiMSE_internal.R

Function that reconstructs historical stock trends from fitted qs and all other parameters including MICE components

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | ```
HistMICE(
x,
StockPars,
FleetPars,
np,
nf,
nareas,
maxage,
nyears,
N,
VF,
FretA,
maxF = 0.9,
MPA,
Rel,
SexPars,
qs,
qfrac
)
``` |

`x` |
Integer, the simulation number |

`StockPars` |
A list of sampled stock parameters, one list element per stock |

`FleetPars` |
A hierarcical list of sampled fleet parameters, first list level is stock, second is fleet |

`np` |
The number of stocks |

`nf` |
The number of fleets |

`nareas` |
The number of areas |

`maxage` |
The maximum number of modelled ages |

`nyears` |
The number of historical 'spool-up' years (from unfished to now) |

`N` |
An array of stock numbers [nsim,np,maxage,nyears,nareas] - only the values from the first year are used |

`VF` |
An array of vulnerability [nsim,np,nf,maxage,nyears+proyears] |

`FretA` |
An array of retention [nsim,np,nf,maxage,nyears+proyears] |

`maxF` |
A numeric value specifying the maximum fishing mortality for any single age class |

`MPA` |
An of spatial closures by year [np,nf,nyears+proyears,nareas] |

`Rel` |
A list of inter-stock relationships see slot Rel of MOM object class |

`SexPars` |
A list of sex-specific relationships (SSBfrom, stock_age) |

`CatchFrac` |
A list of stock-specific fleet fractions of current catch list[[stock]][nsim, nf] |

`bounds` |
Bounds for total q estimation |

T.Carruthers

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