Global functions | |
---|---|
AAV | Source code |
Albacore_TwoFleet | Man page |
Assess_I_hist | Source code |
Assess_diagnostic | Source code |
Assessment | Man page |
Assessment-class | Man page |
Awatea2OM | Man page Source code |
AwateaRead | Source code |
CASAL2OM | Man page Source code |
CASALpars | Man page Source code |
CombineMMP | Source code |
DDSS_4010 | Man page |
DDSS_75MSY | Man page |
DDSS_MSY | Man page |
DD_ | Source code |
DD_SS | Man page Source code |
DD_TMB | Man page Source code |
Data-rich-MP | Man page |
Euler_Lotka_fn | Source code |
HCR40_10 | Man page Source code |
HCR60_20 | Man page Source code |
HCR_FB | Man page Source code |
HCR_MSY | Man page Source code |
HCR_ramp | Man page Source code |
HCRlin | Man page Source code |
HistMICE | Man page Source code |
LinInt | Source code |
MMSE-class | Man page |
MOM-class | Man page |
MP | Man page |
MPCalcsNAs | Man page Source code |
MSEtool | Man page |
MSEtool-package | Man page |
Model-based-MP | Man page |
Mohn_rho | Source code |
NIL | Man page Source code |
PRBcalc | Man page Source code |
PRBplot | Source code |
Probs | Man page Source code |
R_pred | Source code |
ResFromRel | Man page Source code |
SCA | Man page Source code |
SCA2 | Man page Source code |
SCA_4010 | Man page |
SCA_75MSY | Man page |
SCA_MSY | Man page |
SCA_MSY_calc | Source code |
SCA_Pope | Man page Source code |
SCA_Pope_MSY_calc | Source code |
SCA_catch_solver | Source code |
SCA_refpt_calc | Source code |
SIL | Man page Source code |
SOL | Man page Source code |
SP | Man page Source code |
SP_ | Source code |
SP_4010 | Man page |
SP_75MSY | Man page |
SP_Fox | Man page Source code |
SP_MSY | Man page |
SP_SS | Man page Source code |
SP_catch_solver | Source code |
SP_production | Man page Source code |
SRA | Man page |
SRA-class | Man page |
SRA_dynamic_SSB0 | Source code |
SRA_get_likelihoods | Source code |
SRA_posthoc_adjust | Source code |
SRA_retro | Source code |
SRA_retro_subset | Source code |
SRA_scope | Man page |
SRA_scope,OM,Data-method | Man page |
SRA_scope,OM,list-method | Man page |
SRA_scope_est | Source code |
SRA_scope_int | Source code |
SRA_tiny_comp | Source code |
SRopt | Source code |
SS2Data | Man page Source code |
SS2Data_get_comps | Source code |
SS2Data_get_index | Source code |
SS2MOM | Man page Source code |
SS2MOM_fleet | Source code |
SS2MOM_stock | Source code |
SS2OM | Man page Source code |
SSS | Man page Source code |
SSS_4010 | Man page |
SSS_75MSY | Man page |
SSS_MSY | Man page |
SS_import | Source code |
SS_steepness | Source code |
Sub_cpars | Man page Source code |
TAC_MSY | Man page Source code |
TEG | Man page Source code |
VPA | Man page Source code |
VPA2OM | Man page Source code |
applyMMP | Source code |
assign_Assessment_slots | Source code |
avail | Man page Source code |
cDD | Man page Source code |
cDD_ | Source code |
cDD_SS | Man page Source code |
cDD_catch_solver | Source code |
calc.mcmc | Source code |
calculate_Mohn_rho | Source code |
calculate_TAC | Man page Source code |
check_OM_for_sampling | Source code |
compare_SRA | Man page Source code |
compare_models | Man page Source code |
diagnostic_AM | Man page Source code |
expandHerm | Man page Source code |
expand_comp_matrix | Source code |
extract.area.sex.matrices | Source code |
extract.group.matrices | Source code |
extreme.outlier | Source code |
fetch.file.names | Man page Source code |
getDataList | Source code |
getGpars | Source code |
getGpars_r4ss_124 | Source code |
getGpars_r4ss_134 | Source code |
getSR | Source code |
get_MSY_DD | Source code |
get_MSY_cDD | Source code |
get_s_vul_len | Source code |
get_sdreport | Source code |
get_vul_len | Source code |
getclass | Source code |
getfirstlev | Source code |
getinds | Man page Source code |
getnIVs | Man page Source code |
getq_multi | Man page Source code |
getq_multi_MICE | Man page Source code |
getsegment | Source code |
hrate | Man page Source code |
iSCAM2Data | Man page Source code |
iSCAM2OM | Man page Source code |
iSCAMcomps | Man page Source code |
iSCAMinds | Man page Source code |
iVB | Source code |
ilogit | Source code |
ilogitm | Source code |
int_s_sel | Source code |
int_sel | Source code |
ldim | Man page Source code |
load.iscam.files | Man page Source code |
logit | Source code |
mahalanobis_contribution | Source code |
mahdensplot | Source code |
mahplot | Man page Source code |
make_LWT | Source code |
make_MP | Man page Source code |
makemov | Man page Source code |
match_R_years | Source code |
matrix_slot_fn | Source code |
mu | Source code |
multiData | Man page Source code |
multiDataS | Man page Source code |
multiMSE | Man page Source code |
multiMSE_int | Source code |
multidebug | Man page Source code |
negcorlogspace | Source code |
nlz | Source code |
optQ_multi | Man page Source code |
optSR | Source code |
optimize_TMB_model | Source code |
par_identical_sims_fn | Source code |
plot,Assessment,missing-method | Man page |
plot,Assessment,retro-method | Man page |
plot,MMSE,missing-method | Man page |
plot,MOM,missing-method | Man page |
plot,SRA,missing-method | Man page |
plot,prof,missing-method | Man page |
plot,retro,missing-method | Man page |
plot.Assessment | Man page |
plot.MMSE | Man page |
plot.MOM | Man page |
plot.SRA | Man page |
plot.prof | Man page |
plot.retro | Man page |
plotRel | Man page Source code |
plot_Kobe | Source code |
plot_SR | Man page Source code |
plot_betavar | Man page Source code |
plot_composition | Man page Source code |
plot_composition_SRA | Source code |
plot_crosscorr | Man page Source code |
plot_generic_at_age | Source code |
plot_hessian_convergence | Source code |
plot_iter | Source code |
plot_lognormalvar | Man page Source code |
plot_max_gr | Source code |
plot_mov | Man page Source code |
plot_msg | Source code |
plot_normalvar | Source code |
plot_ogive | Source code |
plot_residuals | Man page Source code |
plot_steepness | Man page Source code |
plot_surplus_production | Source code |
plot_timeseries | Man page Source code |
plot_yield_DD | Source code |
plot_yield_SCA | Source code |
plot_yield_SCA_Pope | Source code |
plot_yield_SP | Source code |
plot_yield_VPA | Source code |
plot_yield_cDD | Source code |
plotmulti | Man page Source code |
plotquant | Man page Source code |
popdynMICE | Man page Source code |
popdynOneMICE | Man page Source code |
powdif | Source code |
prelim_AM | Man page Source code |
process_AddIndType | Source code |
process_AddIndV | Source code |
prof | Man page |
prof-class | Man page |
profile | Man page |
profile,Assessment-method | Man page |
profile_likelihood_DD_TMB | Source code |
profile_likelihood_SCA | Source code |
profile_likelihood_SCA2 | Source code |
profile_likelihood_SP | Source code |
profile_likelihood_SSS | Source code |
profile_likelihood_VPA | Source code |
profile_likelihood_cDD | Source code |
profile_likelihood_spict | Source code |
project | Man page |
project-class | Man page |
projection | Man page Source code |
projection_DD_SS | Source code |
projection_SCA2 | Source code Source code |
projection_SCA_Pope | Source code |
projection_SCA_internal | Source code |
projection_SP | Source code |
projection_VPA | Source code |
projection_VPA_internal | Source code |
projection_cDD_SS | Source code |
pull_AddInd | Source code |
pull_Ind | Source code |
pull_Index | Source code |
qestMICE | Man page Source code |
r_prior_fn | Source code |
read.control.file | Man page Source code |
read.data.file | Man page Source code |
read.mcmc | Man page Source code |
read.par.file | Man page Source code |
read.projection.file | Man page Source code |
read.report.file | Man page Source code |
report | Source code |
rescale_report | Source code |
retro | Man page |
retro-class | Man page |
retrospective | Man page |
retrospective,Assessment-method | Man page |
retrospective,SRA-method | Man page |
retrospective_AM | Man page Source code |
retrospective_DD_SS | Source code |
retrospective_DD_TMB | Source code |
retrospective_SCA | Source code |
retrospective_SCA2 | Source code |
retrospective_SCA_Pope | Source code |
retrospective_SP | Source code |
retrospective_SP_SS | Source code |
retrospective_SSS | Source code |
retrospective_VPA | Source code |
retrospective_cDD | Source code |
retrospective_cDD_SS | Source code |
retrospective_spict | Source code |
rmd_B | Source code |
rmd_B_B0 | Source code |
rmd_B_B0_terminal | Source code |
rmd_B_BMSY | Source code |
rmd_B_BMSY_terminal | Source code |
rmd_C_at_age | Source code |
rmd_C_mean_age | Source code |
rmd_DD_SS | Source code |
rmd_DD_TMB | Source code |
rmd_F | Source code |
rmd_FMSY | Source code |
rmd_F_FMSY | Source code |
rmd_F_FMSY_terminal | Source code |
rmd_Kobe | Source code |
rmd_LAA | Source code |
rmd_LW | Source code |
rmd_MSY | Source code |
rmd_N | Source code |
rmd_N_at_age | Source code |
rmd_R | Source code |
rmd_R0 | Source code |
rmd_SCA | Source code |
rmd_SCA2 | Source code |
rmd_SCA_Pope | Source code |
rmd_SP | Source code |
rmd_SP_SS | Source code |
rmd_SR | Source code |
rmd_SRA_D | Source code |
rmd_SRA_Find | Source code |
rmd_SRA_Perr | Source code |
rmd_SRA_R0 | Source code |
rmd_SRA_R_output | Source code |
rmd_SRA_SR | Source code |
rmd_SRA_SSB_output | Source code |
rmd_SRA_fleet_output | Source code |
rmd_SRA_initD | Source code |
rmd_SRA_retrospective | Source code |
rmd_SRA_sel | Source code |
rmd_SRA_survey_output | Source code |
rmd_SSB | Source code |
rmd_SSB_SSB0 | Source code |
rmd_SSB_SSBMSY | Source code |
rmd_SSS | Source code |
rmd_U | Source code |
rmd_U_UMSY | Source code |
rmd_VPA | Source code |
rmd_WAA | Source code |
rmd_assess_fit | Source code |
rmd_assess_fit2 | Source code |
rmd_assess_fit_series | Source code |
rmd_assess_qq | Source code |
rmd_assess_resid | Source code |
rmd_assess_timeseries | Source code |
rmd_at_age | Source code |
rmd_bubble | Source code |
rmd_cDD | Source code |
rmd_cDD_SS | Source code |
rmd_data_age_comps | Source code |
rmd_data_timeseries | Source code |
rmd_dynamic_SSB0 | Source code |
rmd_fit_age_comps | Source code |
rmd_fit_comps | Source code |
rmd_footer | Source code |
rmd_h | Source code |
rmd_head | Source code |
rmd_log_rec_dev | Source code |
rmd_mat | Source code |
rmd_matplot | Source code |
rmd_meanR | Source code |
rmd_persp_plot | Source code |
rmd_residual | Source code |
rmd_retrospective | Source code |
rmd_sel | Source code |
rmd_sel_annual | Source code |
rmd_sel_persp | Source code |
rmd_sp | Source code |
rmd_spict | Source code |
rmd_spict_FMSY | Source code |
rmd_spict_yield_header | Source code |
rmd_summary | Source code |
rmd_yield_F | Source code |
rmd_yield_U | Source code |
rmd_yield_depletion | Source code |
sample_recruitment | Source code |
sample_steepness3 | Source code |
sdreport_int | Source code |
simmov | Man page Source code |
slp | Source code |
slp2 | Source code |
squeeze | Source code |
strip.areas.groups | Source code |
strip.static.params | Source code |
summary,Assessment-method | Man page |
summary,retro-method | Man page |
summary.Assessment | Man page |
summary.retro | Man page |
summary_DD_SS | Source code |
summary_DD_TMB | Source code |
summary_SCA | Source code |
summary_SCA2 | Source code |
summary_SCA_Pope | Source code |
summary_SP | Source code |
summary_SP_SS | Source code |
summary_SSS | Source code |
summary_VPA | Source code |
summary_cDD | Source code |
summary_cDD_SS | Source code |
summary_spict | Source code |
swordfish | Man page |
tinyErr | Man page |
tinyErr,MOM-method | Man page |
tinyErr_MOM | Source code |
ts_matplot | Source code |
update_SRA_data | Source code |
userguide | Man page Source code |
validateTMB | Source code |
vec_slot_fn | Source code |
vector2char | Source code |
vul_fn | Source code |
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