Description Usage Arguments Value Note Author(s) See Also
A function that uses the file location of a fitted SS3 model including input files to population the various slots of an MOM. The function mainly populates the Stock (2-sex if needed) and Fleet (separate fleets with discarding behavior) portions of the MOM; the user may still need to parameterize most of the observation and implementation portions of the MOM.
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SSdir |
A folder with Stock Synthesis input and output files in it. |
nsim |
The number of simulations to take for parameters with uncertainty (for OM@cpars custom parameters). |
proyears |
The number of projection years for MSE |
reps |
The number of stochastic replicates within each simulation in the operating model. |
maxF |
The maximum allowable F in the operating model. |
seed |
The random seed for the operating model. |
interval |
The interval at which management procedures will update the management advice in multiMSE, e.g., 1 = annual updates. |
pstar |
The percentile of the sample of the management recommendation for the MP/MMP. |
Obs |
The observation model (class Obs). |
Imp |
The implementation model (class Imp). This function does not update implementation parameters. |
silent |
Whether to silence messages to the console. |
Name |
The name of the operating model |
Source |
Reference to assessment documentation e.g. a url |
... |
Arguments to pass to SS_output. |
An object of class MOM.
Currently tested on r4ss version 1.38.1 and SS 3.30.14.
Q. Huynh
SS2Data SS2OM
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