SS2MOM: Import Stock Synthesis to multi-fleet 2-sex MOM
In tcarruth/MSEtool: Management Strategy Evaluation Toolkit

Description Usage Arguments Value Note Author(s) See Also

A function that uses the file location of a fitted SS3 model including input files to population the various slots of an MOM. The function mainly populates the Stock (2-sex if needed) and Fleet (separate fleets with discarding behavior) portions of the MOM; the user may still need to parameterize most of the observation and implementation portions of the MOM.

SS2MOM(
  SSdir,
  nsim = 48,
  proyears = 50,
  reps = 1,
  maxF = 3,
  seed = 1,
  interval = 1,
  pstar = 0.5,
  Obs = DLMtool::Generic_Obs,
  Imp = DLMtool::Perfect_Imp,
  silent = FALSE,
  Name = "MOM generated by SS2MOM",
  Source = "No Source provided",
  ...
)

`SSdir`	A folder with Stock Synthesis input and output files in it.
`nsim`	The number of simulations to take for parameters with uncertainty (for OM@cpars custom parameters).
`proyears`	The number of projection years for MSE
`reps`	The number of stochastic replicates within each simulation in the operating model.
`maxF`	The maximum allowable F in the operating model.
`seed`	The random seed for the operating model.
`interval`	The interval at which management procedures will update the management advice in multiMSE, e.g., 1 = annual updates.
`pstar`	The percentile of the sample of the management recommendation for the MP/MMP.
`Obs`	The observation model (class Obs).
`Imp`	The implementation model (class Imp). This function does not update implementation parameters.
`silent`	Whether to silence messages to the console.
`Name`	The name of the operating model
`Source`	Reference to assessment documentation e.g. a url
`...`	Arguments to pass to SS_output.