Description Usage Arguments Author(s)
View source: R/Single_stock_multi_q_REDUNDANT.R
Optimize q for a single simulation
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | optQ_multi(
par,
depc,
SSB0c,
nareas,
maxage,
Ncurr,
pyears,
M_age,
MatAge,
Asize_c,
WtAge,
Vuln,
Retc,
Prec,
movc,
SRrelc,
Effind,
Spat_targc,
hc,
R0c,
SSBpRc,
aRc,
bRc,
maxF,
MPAc,
CFc,
useCPP,
mode = "opt"
)
|
depc |
Depletion value |
SSB0c |
Unfished spawning biomass |
nareas |
Number of areas |
maxage |
Maximum age |
Ncurr |
Current N-at-age |
pyears |
Number of years to project population dynamics |
M_age |
M-at-age |
MatAge |
Maturity-at-age |
Asize_c |
Numeric vector (length nareas) with size of each area |
WtAge |
Weight-at-age |
Vuln |
Vulnerability-at-age |
Retc |
Retention-at-age |
Prec |
Recruitment error by year |
movc |
movement matrix |
SRrelc |
SR parameter |
Effind |
Historical fishing effort |
Spat_targc |
Spatial targetting |
hc |
Steepness |
R0c |
Unfished recruitment by area |
SSBpRc |
Unfished spawning biomass per recruit by area |
aRc |
Ricker aR |
bRc |
Ricker bR |
maxF |
maximum F |
useCPP |
Logical. Use the CPP code? |
logQ |
log q |
MPA |
A matrix of spatial closures by year |
model |
Character 'opt' is optimization and returns an objective funciton to be minimized, anything else returns fitted values |
A. Hordyk
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