optQ_multi: Optimize q for a single simulation

In tcarruth/MSEtool: Management Strategy Evaluation Toolkit

Description

Optimize q for a single simulation

Usage

optQ_multi(
  par,
  depc,
  SSB0c,
  nareas,
  maxage,
  Ncurr,
  pyears,
  M_age,
  MatAge,
  Asize_c,
  WtAge,
  Vuln,
  Retc,
  Prec,
  movc,
  SRrelc,
  Effind,
  Spat_targc,
  hc,
  R0c,
  SSBpRc,
  aRc,
  bRc,
  maxF,
  MPAc,
  CFc,
  useCPP,
  mode = "opt"
)

Arguments

depc	Depletion value
SSB0c	Unfished spawning biomass
nareas	Number of areas
maxage	Maximum age
Ncurr	Current N-at-age
pyears	Number of years to project population dynamics
M_age	M-at-age
MatAge	Maturity-at-age
Asize_c	Numeric vector (length nareas) with size of each area
WtAge	Weight-at-age
Vuln	Vulnerability-at-age
Retc	Retention-at-age
Prec	Recruitment error by year
movc	movement matrix
SRrelc	SR parameter
Effind	Historical fishing effort
Spat_targc	Spatial targetting
hc	Steepness
R0c	Unfished recruitment by area
SSBpRc	Unfished spawning biomass per recruit by area
aRc	Ricker aR
bRc	Ricker bR
maxF	maximum F
useCPP	Logical. Use the CPP code?
logQ	log q
MPA	A matrix of spatial closures by year
model	Character 'opt' is optimization and returns an objective funciton to be minimized, anything else returns fitted values

Author(s)

A. Hordyk

tcarruth/MSEtool documentation built on Oct. 19, 2020, 6:09 a.m.