iSCAM2OM: Reads MLE estimates from iSCAM file structure into an...

In tcarruth/MSEtool: Management Strategy Evaluation Toolkit

Description

A function that uses the file location of a fitted iSCAM model including input files to population the various slots of an operating model parameter estimates. iSCAM2OM relies on several functions written by Chris Grandin (DFO PBS).

Usage

iSCAM2OM(
  iSCAMdir,
  nsim = 48,
  proyears = 50,
  mcmc = F,
  Name = NULL,
  Source = "No source provided",
  length_timestep = 1,
  Author = "No author provided"
)

Arguments

iSCAMdir	A folder with iSCAM input and output files in it
nsim	The number of simulations to take for parameters with uncertainty (for OM@cpars custom parameters)
proyears	The number of MSE projection years
mcmc	Whether to use mcmc samples to create custom parameters cpars
Name	The name of the operating model
Source	Reference to assessment documentation e.g. a url
length_timestep	How long is a model time step in years (e.g. a quarterly model is 0.25, a monthly model 1/12)
Author	Who did the assessment

Author(s)

T. Carruthers

tcarruth/MSEtool documentation built on Oct. 19, 2020, 6:09 a.m.