Description Usage Arguments Value Note Author(s) See Also
A function that uses the file location of a fitted SS3 model including input files to population the various slots of an Data object.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
SSdir |
A folder with Stock Synthesis input and output files in it |
Name |
The name for the Data object |
Common_Name |
Character string for the common name of the stock. |
Species |
Scientific name of the species |
Region |
Geographic region of the stock or fishery. |
min_age_M |
Currently, the Data object supports a single value of M for all ages. The argument selects the minimum age for calculating the mean of age-dependent M from the SS assessment. |
gender |
An integer index for the sex for importing biological parameters (1 = female, 2 = male). |
comp_fleet |
A vector of indices corresponding to fleets in the assessment over which to aggregate the composition
(catch-at-length and catch-at-age) data. By default, characer string |
comp_season |
Integer, for seasonal models, the season for which the value of the index will be used. By default, |
comp_partition |
Integer vector for selecting length/age observations that are retained (2), discarded (1), or both (0). By default, |
comp_gender |
Integer vector for selecting length/age observations that are female (1), male (2), or both (0), or both scaled to sum to one (3).
By default, |
index_fleet |
Obsolete as of DLMtool version 5.4 (all indices will now be included in the AddInd slot). |
index_season |
Integer, for seasonal models, the season for which the value of the index will be used. By default, |
... |
Arguments to pass to SS_output |
An object of class Data.
Currently supports the version of r4ss on CRAN (v.1.24) and Github (v.1.34-38). Function may be incompatible with other versions of r4ss.
T. Carruthers and Q. Huynh
SS2OM
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