A_melanoma_v5: Trichotomous immune cells and melanoma
In tdw1221/NITUMID: Non-negative Matrix Factorization-based Immune-TUmor MIcroenvironment Deconvolution
Description
This is a trichotomous guide matrix (53 by 11) corresponding to the 10 immune cell types and melanoma
each row represents a gene. For the i-j entry, it is encoded as 1 when this gene i is NOT a signature gene to
celltype j; and it is encoded as 0.5 it is a secodnary siganture gene for the j cell type; and 0 if it is a primary
signature gene for j-th cell type. This encoding is counter-intuitive (if you think it should be the other way around)
is because it is easier to take this form for penalization.
tdw1221/NITUMID documentation built on May 31, 2019, 1:54 a.m.
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Description
This is a trichotomous guide matrix (53 by 11) corresponding to the 10 immune cell types and melanoma each row represents a gene. For the i-j entry, it is encoded as 1 when this gene i is NOT a signature gene to celltype j; and it is encoded as 0.5 it is a secodnary siganture gene for the j cell type; and 0 if it is a primary signature gene for j-th cell type. This encoding is counter-intuitive (if you think it should be the other way around) is because it is easier to take this form for penalization.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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