NITUMID_simple: Simple version of NITUMID

In tdw1221/NITUMID: Non-negative Matrix Factorization-based Immune-TUmor MIcroenvironment Deconvolution

Description

'NITUMID_simple' This is a simplified version of NITUMID, which uses most of the default settings (generic signature genes, etc.), you can only input a gene expression data frame whose rownames is gene symbol, and tells it if this data is from pure cells or bulk tumor (melanoma)

Usage

NITUMID_simple(Y, if.bulk)

Arguments

Y	Y is the gene expression matrix that has #signature genes rows and #samples columns, Y's rowname must be gene symbols
if.bulk	Logical, if Y is bulk gene expression data. If Y is purified cell gene expression, please set it as FALSE.

Value

'NITUMID_simple' returns a list of two object, W matrix and H matrix

Examples

TBA

tdw1221/NITUMID documentation built on May 31, 2019, 1:54 a.m.