Description Usage Arguments Value Examples
'NITUMID_simple' This is a simplified version of NITUMID, which uses most of the default settings (generic signature genes, etc.), you can only input a gene expression data frame whose rownames is gene symbol, and tells it if this data is from pure cells or bulk tumor (melanoma)
1 | NITUMID_simple(Y, if.bulk)
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Y |
Y is the gene expression matrix that has #signature genes rows and #samples columns, Y's rowname must be gene symbols |
if.bulk |
Logical, if Y is bulk gene expression data. If Y is purified cell gene expression, please set it as FALSE. |
'NITUMID_simple' returns a list of two object, W matrix and H matrix
1 | TBA
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