signature_marker_melanoma: Siganture genes' information for immune cells and melanoma

In tdw1221/NITUMID: Non-negative Matrix Factorization-based Immune-TUmor MIcroenvironment Deconvolution

Description

A dataset contains all 53 signature genes' information for 10 immune cell types and melanoma, including their gene symbols, corresponding primary and secondary cell types and supporting evidence for each gene being signature. Notice that the sigantures are subjective to changes between different tumor types. For a detailed introduction to primary and secondary cell types, please refer to our paper.

Format

this is a dataframe with 53 rows and 4 variables:

Cell

to which cell type is this gene a primary signature

Secondary_cells

to which cell type(s) is this gene a secondary signature

gene_symbol

the gene symbol

Supporting_Evidence

links or publications that justify each gene as a siganture gene

tdw1221/NITUMID documentation built on May 31, 2019, 1:54 a.m.