plot_matrix | R Documentation |
Plots a heatmap.
## S4 method for signature 'matrix' autoplot(object, ..., diag = TRUE, upper = TRUE, lower = TRUE) ## S4 method for signature 'dist' autoplot(object, ..., diag = FALSE, upper = FALSE, lower = !upper) ## S4 method for signature 'OccurrenceMatrix' autoplot(object, ..., diag = FALSE, upper = FALSE, lower = !upper) ## S4 method for signature 'matrix,missing' plot(x, diag = TRUE, upper = TRUE, lower = TRUE, ...) ## S4 method for signature 'dist,missing' plot(x, diag = FALSE, upper = FALSE, lower = !upper, ...) ## S4 method for signature 'OccurrenceMatrix,missing' plot(x, diag = FALSE, upper = FALSE, lower = !upper, ...)
object, x |
A An object to be plotted (typically an object of class CountMatrix). |
... |
Currently not used. |
diag |
A |
upper |
A |
lower |
A |
autoplot()
returns a ggplot
object.
plot()
is called it for its side-effects: it results in a graphic being
displayed (invisibly returns x
).
N. Frerebeau
Desachy, B. (2004). Le sériographe EPPM: un outil informatisé de sériation graphique pour tableaux de comptages. Revue archéologique de Picardie, 3(1), 39-56. doi: 10.3406/pica.2004.2396.
pvi()
Other plot:
plot_bar
,
plot_diversity
,
plot_line
,
plot_spot()
## Abundance data (data from Desachy 2004) data("compiegne", package = "folio") ## Coerce dataset to absolute frequencies counts <- as_count(compiegne) ## Coerce dataset to relative frequencies freq <- as_composition(compiegne) ## Plot matrix diagram... plot(counts) plot(freq) ## Presence/absence data inc <- sample(0:1, size = 100, replace = TRUE) bin <- IncidenceMatrix(data = inc, nrow = 10, ncol = 10) autoplot(bin) + ggplot2::scale_fill_manual(values = c("TRUE" = "black", "FALSE" = "white"))
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.