Files in tfojo1/jheem

Executes the JHEEM (Johns Hopkins Epidemiological and Economic Model) - a compartmental model of HIV

R/RcppExports.R R/access.R R/diffeq.R R/dimension_names.R R/expand_population.R R/helpers.R R/jheem.R R/population_growth.R R/population_skeletons.R R/postprocessing.R R/result_compatibility.R R/results.R R/setup.R R/single_simulation_plots.R R/test_rcpp.R R/testing.R R/tracking.R R/transitions.R R/transmission.R man/access-set.Rd man/access.Rd man/combine.jheem.results.Rd man/create.birth.proportions.from.population.Rd man/create.birth.proportions.hiv.negative.Rd man/create.birth.proportions.hiv.positive.to.negative.Rd man/create.birth.proportions.hiv.positive.to.positive.Rd man/create.contact.array.from.marginals.Rd man/create.susceptibility.array.from.marginals.Rd man/create.transmissibility.array.from.marginals.Rd man/expand.jheem.results.Rd man/expand.population.to.general.Rd man/expand.population.to.hiv.negative.Rd man/expand.population.to.hiv.positive.Rd man/expand.to.contact.array.Rd man/expand.to.new.infection.proportions.Rd man/expand.to.transition.array.hiv.negative.Rd man/expand.to.transition.array.hiv.positive.Rd man/extract.diagnosed.hiv.Rd man/extract.hiv.specific.mortality.Rd man/extract.incidence.Rd man/extract.new.diagnoses.Rd man/extract.overall.hiv.mortality.Rd man/extract.population.subset.Rd man/extract.prevalence.Rd man/extract.tracked.transition.Rd man/get.aging.skeleton.hiv.negative.Rd man/get.aging.skeleton.hiv.positive.Rd man/get.birth.proportions.to.hiv.negative.skeleton.Rd man/get.contact.array.skeleton.Rd man/get.general.population.skeleton.Rd man/get.general.transition.array.skeleton.Rd man/get.hiv.negative.population.skeleton.Rd man/get.hiv.negative.transition.array.skeleton.Rd man/get.hiv.positive.population.skeleton.Rd man/get.hiv.positive.transition.array.skeleton.Rd man/get.new.infection.proportions.skeleton.Rd man/get.population.skeleton.Rd man/get.seeded.initial.populations.Rd man/get.susceptibility.array.skeleton.Rd man/get.transition.array.skeleton.Rd man/get.transmissibility.array.skeleton.Rd man/get.uniform.new.infection.proportions.Rd man/hello.Rd man/initialize.jheem.Rd man/jheem.Rd man/make.age.strata.Rd man/multiply.contact.array.from.Rd man/multiply.contact.array.to.Rd man/rcpp_hello.Rd man/run.jheem.Rd man/set.aging.Rd man/set.aging.hiv.negative.Rd man/set.aging.hiv.positive.Rd man/set.birth.proportions.hiv.negative.Rd man/set.birth.proportions.hiv.positive.Rd man/set.birth.proportions.no.maternal.transmission.Rd man/set.emigration.Rd man/set.emigration.hiv.negative.Rd man/set.emigration.hiv.positive.Rd man/set.fertility.Rd man/set.fertility.hiv.negative.Rd man/set.fertility.hiv.positive.Rd man/set.fixed.population.size.Rd man/set.fixed.population.strata.Rd man/set.fixed.size.strata.Rd man/set.general.mortality.Rd man/set.general.mortality.hiv.negative.Rd man/set.general.mortality.hiv.positive.Rd man/set.global.transmission.rate.Rd man/set.hiv.specific.mortality.Rd man/set.immigration.proportions.Rd man/set.immigration.rates.Rd man/set.initial.population.hiv.negative.Rd man/set.initial.population.hiv.positive.Rd man/set.initial.populations.Rd man/set.keep.strata.sizes.constant.Rd man/set.new.infection.proportions.Rd man/set.susceptibility.Rd man/set.track.hiv.specific.mortality.Rd man/set.track.incidence.dimensions.Rd man/set.track.mortality.Rd man/set.track.overall.mortality.Rd man/set.tracked.transition.hiv.negative.Rd man/set.tracked.transition.hiv.positive.Rd man/set.transition.array.hiv.negative.Rd man/set.transition.array.hiv.positive.Rd man/set.transmissibility.Rd man/set.transmission.contact.array.Rd man/set.use.fixed.population.Rd man/stratify.males.by.orientation.Rd man/stratify.population.Rd man/subset.jheem.results.Rd man/test.jheem.Rd