tgrimes/SeqNet: Generate RNA-seq data from regulatory networks

Contains a function for creating networks by specifying cliques, hubs, and modules. Random, small-world networks can easily be generated by default. A plotting function is also implemented, with an emphasis on having comparisons between networks made easy. RNA-seq expression counts are generated by passing a network into the generator. Some gene co-expression methods are also provided, including correlations, WGCNA, and cPLS.

Getting started

Package details

Maintainer
LicenseWhat license is it under?
Version0.0.2.0002
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("tgrimes/SeqNet")
tgrimes/SeqNet documentation built on Dec. 1, 2018, 6:55 a.m.