tgrimes/SeqNet: Generate RNA-seq data from regulatory networks

Contains a function for creating networks by specifying cliques, hubs, and modules. Random, small-world networks can easily be generated by default. A plotting function is also implemented, with an emphasis on having comparisons between networks made easy. RNA-seq expression counts are generated by passing a network into the generator. Some gene co-expression methods are also provided, including correlations, WGCNA, and cPLS.

Getting started

Package details

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Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
tgrimes/SeqNet documentation built on Dec. 1, 2018, 6:55 a.m.