API for tgrimes/SeqNet
Generate RNA-seq data from regulatory networks

Global functions
add_sign_to_network Man page Source code
add_weight_to_network Man page Source code
as.CONFUSION Man page Source code
as.data.frame.CONFUSION Man page Source code
create_network Man page Source code
create_network_from_adjacency Man page Source code
create_network_scale_free Source code
fdr Man page Source code
gen_gamma_poisson Man page Source code
gen_gaussian Man page Source code
gen_gaussian_list Man page Source code
get_adj_matrix_from_network Man page Source code
get_auc Source code
get_confusion_matrix Man page Source code
get_degree_change Man page Source code
get_degree_distribution Man page Source code
get_pathway_list Man page Source code
get_reference_count_means Man page Source code
get_roc Source code
get_sigma_from_precision_list Man page Source code
get_summary_for_node Man page Source code
isSymmetric.shrinkage Man page Source code
normalize_cpls_scores Man page Source code
plot.CONFUSION Man page Source code
plot.network Man page Source code
plot_network Man page
plot_network_diff Man page Source code
plot_pr Source code
plot_roc Source code
print.CONFUSION Man page Source code
print.ROC Source code
random_precision_from_network_list Man page Source code
remove_connections_to_node Man page Source code
remove_node_from_clique Man page Source code
remove_node_from_hub Man page Source code
remove_node_from_module Man page Source code
remove_small_components_from_module Man page Source code
rewire_connections_to_node Man page Source code
run_corr Man page Source code
run_cpls Man page Source code
run_cpls_parallel Man page Source code
run_example Man page Source code
run_glasso Man page Source code
run_icorr Man page Source code
run_pcor Man page Source code
run_wgcna Man page Source code
scores_to_adjacency_matrix Man page Source code
set_low_rank_scores_to_zero Man page Source code
summarize_confusion Man page Source code
test_fdr Source code
test_network_measures Source code
vector_to_matrix Man page Source code
tgrimes/SeqNet documentation built on Dec. 1, 2018, 6:55 a.m.