Description Usage Arguments Value Examples
Rewire connections
1 2 3 4 |
x |
The 'network', 'network_module', or 'matrix' object to modify. |
prob_rewire |
A value between 0 and 1. The connections to each node will be rewired with probability equal to 'prob_rewire'. |
weights |
(Optional) A vector of weights for each node. These are used in addition to the degree of each node when sampling a node to rewire to. |
alpha |
A positive value used to parameterize the Beta distribution. |
beta |
A positive value used to parameterize the Beta distribution. |
epsilon |
A small constant added to the sampling probability of each node. |
run_checks |
If TRUE and 'x' is a matrix, then it is checked that 'x' is an adjacency matrix. This catches the case where 'x' is a weighted matrix, in which case the weights are removed and a warning is given. |
... |
Additional arguments. |
The modified module.
1 2 3 4 5 6 7 8 9 | # Create a random network with 10 nodes.
nw <- random_network(10)
# Rewire nodes in the network each with probability 1/2
nw_rewired <- rewire_connections(nw, 0.5)
# Plot the two networks for comparison
g <- plot(nw)
plot(nw_rewired, g) # Pass in g to mirror the layout.
# Or plot the differential network.
plot_network_diff(nw, nw_rewired, g)
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