API for thackl/gggenomes
A Grammar of Graphics for Comparative Genomics

Global functions
%<>% Man page
%>% Man page
PositionPile Man page
PositionSixframe Man page
PositionStrand Man page
PositionStrandpile Man page
`active<-` Source code
`seqs<-.gggenomes_layout` Source code
`seqs<-.gggenomes` Source code
`seqs<-` Source code
activate Man page Source code
activate.tbl_genome_layout Source code
active Man page Source code
add_clusters Man page Source code
add_clusters.gggenomes Source code
add_clusters.gggenomes_layout Source code
add_feature_layout_scaffold Source code
add_feature_tracks Source code
add_features Man page Source code
add_features.gggenomes Source code
add_features.gggenomes_layout Source code
add_link_layout_scaffold Source code
add_link_tracks Source code
add_links Man page Source code
add_links.gggenomes Source code
add_links.gggenomes_layout Source code
add_seqs Source code
add_seqs.gggenomes Source code
add_seqs.gggenomes_layout Source code
add_subfeature_tracks Source code
add_subfeatures Man page Source code
add_subfeatures.gggenomes Source code
add_subfeatures.gggenomes_layout Source code
add_sublink_tracks Source code
add_sublinks Man page Source code
add_sublinks.gggenomes Source code
add_sublinks.gggenomes_layout Source code
aes_intersect Source code
aes_nudge_by_strand Source code
anchor Man page Source code
as_features Man page Source code
as_features.default Source code
as_features.tbl_df Source code
as_links Man page Source code
as_links.default Source code
as_links.tbl_df Source code
as_seqs Man page Source code
as_seqs.default Source code
as_seqs.tbl_df Source code
as_subfeatures Man page Source code
as_subfeatures.default Source code
as_subfeatures.tbl_df Source code
as_sublinks Man page Source code
as_sublinks.default Source code
as_sublinks.tbl_df Source code
as_tibble.GRanges Source code
as_tracks Source code
cds2arrow Source code
cds2chevron Source code
cds2rect Source code
check_strand Source code
check_strand.character Source code
check_strand.factor Source code
check_strand.logical Source code
check_strand.numeric Source code
cluster2sublinks Source code
combine_strands Source code
combine_two_strands Source code
dim.gggenomes_layout Man page Source code
drop_feature_layout Source code
drop_layout Source code
drop_link_layout Source code
drop_seq_layout Source code
example_files Man page Source code
example_sets Man page Source code
flip Man page Source code
flip.gggenomes Source code
flip.gggenomes_layout Source code
flip_impl Source code
flip_nicely Man page Source code
flip_nicely.gggenomes Source code
flip_nicely.gggenomes_layout Source code
flip_seq Man page Source code
flip_seq.gggenomes Source code
flip_seq.gggenomes_layout Source code
flip_strand Source code
flip_strand.character Source code
flip_strand.logical Source code
flip_strand.numeric Source code
focus Man page Source code
gene_to_poly Source code
geom_bin_label Man page Source code
geom_feature Man page Source code
geom_feature_label Source code
geom_gene Man page Source code
geom_gene2 Source code
geom_gene_label Man page Source code
geom_link Man page Source code
geom_link_label Man page Source code
geom_seq Man page Source code
geom_seq_label Man page Source code
gggenomes Man page Source code
ggplot.gggenomes_layout Man page Source code
has_dots Source code
has_vars Man page Source code
if_reverse Source code
in_range Man page Source code
in_range_impl Source code
infer_seqs_from_features Source code
infer_seqs_from_links Source code
is_likely_feature_track Source code
is_marginal Source code
is_reverse Source code
layout Man page Source code
layout.gggenomes Source code
layout.gggenomes_layout Source code
layout_features Man page Source code
layout_genomes Man page Source code
layout_links Man page Source code
layout_seqs Man page Source code
link_to_poly Source code
makeContent.cdsarrowtree Source code
max_width Source code
name_unnamed_from_template Source code
name_unnamed_from_values Source code
pick Man page Source code
pick_at Man page Source code
pick_bins Man page Source code
pick_impl Source code
position_pile Man page Source code
position_sixframe Man page Source code
position_strand Man page Source code
position_strandpile Man page Source code
project_features Source code
project_links Source code
pull_features Man page Source code
pull_features.gggenomes Source code
pull_features.gggenomes_layout Source code
pull_links Man page Source code
pull_links.gggenomes Source code
pull_links.gggenomes_layout Source code
pull_seqs Man page Source code
pull_seqs.gggenomes Source code
pull_seqs.gggenomes_layout Source code
pull_track Man page Source code
pull_track.gggenomes Source code
pull_track.gggenomes_layout Source code
read_alitv Man page Source code
read_gffs Man page Source code
read_gffs_as_contigs Man page Source code
read_paf Man page Source code
reexports Man page
require_vars Man page Source code
seqs Man page Source code
seqs.gggenomes Source code
seqs.gggenomes_layout Source code
shared_names Source code
shift Man page Source code
stack_pos Source code
strand_chr Source code
strand_chr.character Source code
strand_chr.factor Source code
strand_chr.logical Source code
strand_chr.numeric Source code
strand_int Source code
strand_int.character Source code
strand_int.factor Source code
strand_int.logical Source code
strand_int.numeric Source code
strand_lgl Source code
strand_lgl.character Source code
strand_lgl.logical Source code
strand_lgl.numeric Source code
swap_if Man page Source code
theme_gggenomes_clean Man page Source code
track Source code
track.gggenomes Source code
track.gggenomes_layout Source code
track_ids Source code
track_ids.gggenomes Source code
track_ids.gggenomes_layout Source code
trim_features_to_subseqs Source code
trim_links_to_subseqs Source code
use_bins Man page Source code
use_features Man page Source code
use_genes Man page Source code
use_links Man page Source code
use_seqs Man page Source code
width Man page Source code
width0 Man page Source code
wrap Source code
wrap_impl Source code
x Man page Source code
xend Man page Source code
thackl/gggenomes documentation built on July 14, 2020, 4 p.m.