emale_ava: All-versus-all whole genome alignments of 6 EMALE genomes

In thackl/gggenomes: A Grammar of Graphics for Comparative Genomics

All-versus-all whole genome alignments of 6 EMALE genomes

Description

One row per alignment block. Alignments were computed with minimap2.

Usage

emale_ava

Format

A data frame with 125 rows and 23 columns

file_id

name of the file the data was read from

seq_id

identifier of the sequence the feature appears on

length

length of the sequence

start

start of the feature on the sequence

end

end of the feature on the sequence

strand

orientation of the feature relative to the sequence (+ or -)

seq_id2

identifier of the sequence the feature appears on

length2

length of the sequence

start2

start of the feature on the sequence

end2

end of the feature on the sequence

map_match, map_length, map_quality, NM, ms, AS, nn, tp, cm, s1, de, rl, cg

see https://github.com/lh3/miniasm/blob/master/PAF.md for additional columns

Source

• Derived & bundled data: ex("emales/emales.paf")

thackl/gggenomes documentation built on March 10, 2024, 7:26 a.m.