geom_bin_label: Draw bin labels

In thackl/gggenomes: A Grammar of Graphics for Comparative Genomics

Draw bin labels

Description

Put bin labels left of the sequences. nudge_left adds space relative to the total bin width between the label and the seqs, by default 5%. expand_left expands the plot to the left by 20% to make labels visible.

Usage

geom_bin_label(
  mapping = NULL,
  data = bins(),
  hjust = 1,
  size = 3,
  nudge_left = 0.05,
  expand_left = 0.2,
  expand_x = NULL,
  expand_aes = NULL,
  yjust = 0,
  ...
)

Arguments

mapping	Set of aesthetic mappings created by aes(). If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.
data	The data to be displayed in this layer. There are three options: If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot(). A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify() for which variables will be created. A function will be called with a single argument, the plot data. The return value must be a data.frame, and will be used as the layer data. A function can be created from a formula (e.g. ~ head(.x, 10)).
hjust	Moves the text horizontally
size	of the label
nudge_left	by this much relative to the widest bin
expand_left	by this much relative to the widest bin
expand_x	expand the plot to include this absolute x value
expand_aes	provide custom aes mappings for the expansion (advanced)
yjust	for multiline bins set to 0.5 to center labels on bins, and 1 to align labels to the bottom.
...	Other arguments passed on to layer(). These are often aesthetics, used to set an aesthetic to a fixed value, like colour = "red" or size = 3. They may also be parameters to the paired geom/stat.

Details

Set x and expand_x to an absolute position to align all labels at a specific location

Examples

s0 <- read_seqs(list.files(ex("cafeteria"), "Cr.*\\.fa.fai$", full.names = TRUE))
s1 <- s0 %>% dplyr::filter(length>5e5)

gggenomes(emale_genes) + geom_seq() + geom_gene() +
  geom_bin_label()

# make larger labels and extra room on the canvas
gggenomes(emale_genes) + geom_seq() + geom_gene() +
  geom_bin_label(size = 7, expand_left =.4)

# align labels for wrapped bins:
# top
gggenomes(seqs=s1, infer_bin_id=file_id, wrap=5e6) +
  geom_seq() + geom_bin_label() + geom_seq_label()

# center
gggenomes(seqs=s1, infer_bin_id=file_id, wrap=5e6) +
  geom_seq() + geom_bin_label(yjust=.5) + geom_seq_label()

# bottom
gggenomes(seqs=s1, infer_bin_id=file_id, wrap=5e6) +
  geom_seq() + geom_bin_label(yjust=1) + geom_seq_label()

thackl/gggenomes documentation built on March 10, 2024, 7:26 a.m.