make.example.files: Creating example input files

In theboocock/rehh: Searching for footprints of selection using Haplotype Homozygosity based tests

Description

This function allows to copy in the working directory three different example files: bta12_cgu.hap (an haplotype input file in standard format), bta12_hapguess_switch.out (an haplotype input file in fastphase output format) and map.inp (a SNP information input file). These files contains data for 280 haplotypes (originating from 140 individuals belonging to the Creole cattle breed from Guadeloupe) of 1,424 SNPs mapping to bovine chromosome 12 (BTA12) (see reference below).

Usage

make.example.files()

References

Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World Creole cattle breed. Molecular Ecology, 20, 3128–3143.

See Also

data2haplohh

Examples

make.example.files()

theboocock/rehh documentation built on May 31, 2019, 9:11 a.m.