rsbplot: Plot Rsb over a genome
In theboocock/rehh: Searching for footprints of selection using Haplotype Homozygosity based tests
Description
Usage
Arguments
Value
References
See Also
Examples
Description
Plot Rsb over a genome.
Usage
1
Arguments
data
A matrix with nsnps rows and 4 columns (Chromosome name, position of the SNP, Rsb, Pvalue (either unilateral or bilateral)) (e.g. obtained using ies2rsb function.
plot.pval
Either TRUE or FALSE if Pvalue should not be plotted
ylim.scan
An horizontal line is added at the corresponding coordinate, for instance to represent a significance threshold
pch
Type of the points representing SNPs in the plot(s)
main
Main Legend of the plot
Value
The function returns a plot
References
Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World
Creole cattle breed. Molecular Ecology, 20, 3128–3143.
See Also
calc_ehhs,scan_hh,distribplot,ihsplot
Examples
1
2
3
4
5
data(wgscan.cgu) ; data(wgscan.eut)
## results from a genome scan (44,057 SNPs)
#see ?wgscan.eut and ?wgscan.cgu for details
res.rsb<-ies2rsb(wgscan.cgu,wgscan.eut,"CGU","EUT")
rsbplot(res.rsb$res.rsb)
theboocock/rehh documentation built on May 31, 2019, 9:11 a.m.
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Description Usage Arguments Value References See Also Examples
Description
Plot Rsb over a genome.
Usage
1 |
Arguments
data |
A matrix with nsnps rows and 4 columns (Chromosome name, position of the SNP, Rsb, Pvalue (either unilateral or bilateral)) (e.g. obtained using |
plot.pval |
Either TRUE or FALSE if Pvalue should not be plotted |
ylim.scan |
An horizontal line is added at the corresponding coordinate, for instance to represent a significance threshold |
pch |
Type of the points representing SNPs in the plot(s) |
main |
Main Legend of the plot |
Value
The function returns a plot
References
Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World Creole cattle breed. Molecular Ecology, 20, 3128–3143.
See Also
calc_ehhs,scan_hh,distribplot,ihsplot
Examples
1 2 3 4 5 | data(wgscan.cgu) ; data(wgscan.eut)
## results from a genome scan (44,057 SNPs)
#see ?wgscan.eut and ?wgscan.cgu for details
res.rsb<-ies2rsb(wgscan.cgu,wgscan.eut,"CGU","EUT")
rsbplot(res.rsb$res.rsb)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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