get_sequences: Title Get fasta sequences from PANGEA dataframe

In thednainus/pangeaZA: Analyses and models for PANGEA data from South Africa (ZA).

Title Get fasta sequences from PANGEA dataframe

Description

Function to select sequences from specific country and save these DNA sequences as FASTA.

Usage

get_sequences(all_data, country_name, outfile_name, add_unknown)

Arguments

all_data	Dataframe containing all data
country_name	String for country name of interest
outfile_name	String with the output filenama to save sequences
add_unknown	value "yes" or "no". If "yes" include all genders (females, males and unknown), if "no" do not add sample in which gender is unknown.

Value

Fasta file for selected DNA sequences.

Examples

#To Do.

thednainus/pangeaZA documentation built on May 9, 2022, 6:21 p.m.