mcmcfit0.0: Runs parallel mcmc chains in order to fit model0

In thednainus/pangeaZA: Analyses and models for PANGEA data from South Africa (ZA).

Runs parallel mcmc chains in order to fit model0

Description

Priors are defined in the function

Usage

mcmcfit0.0(
  BDTR,
  mod0,
  nc = 1,
  iterations = 10,
  likelihood = "PL2",
  continueFits = NULL
)

Arguments

BDTR	A phydynR::DatedTree object
nc	Integer number of CPUs and number of MCMC chains
iterations	Length of MCMC chains
likelihood	Switch for different coalescent likelihood approximations, passed to phydynR::colik
mode0	A list with model objects generated by generate_model

thednainus/pangeaZA documentation built on May 9, 2022, 6:21 p.m.