sa_treedater: Does a treedater analysis for gag, env or pol and usign the...

View source: R/treedater0.R

sa_treedaterR Documentation

Does a treedater analysis for gag, env or pol and usign the south africa data

Description

Does a treedater analysis for gag, env or pol and usign the south africa data

Usage

sa_treedater(
  TREEFN = "sa_ml_gag.nwk",
  SRCMDFN = "SA_src_gag_metadata_mod.csv",
  PANGEAFN = "../../PANGEA_Extract_Volz_2019-04-16.csv",
  OG = c("K03454_gag", "AY371157_gag"),
  seqlen = 1476,
  NCPU = 8,
  outstem = "gag"
)

thednainus/pangeaZA documentation built on May 9, 2022, 6:21 p.m.