API for thomasp85/FindMyFriends
Microbial Comparative Genomics in R

Global functions
.fillDefaults Man page
.loadPgExample Man page
FindMyFriends-package Man page
[,pgVirtual,character,ANY,ANY-method Man page
[,pgVirtual,integer,ANY,ANY-method Man page
[,pgVirtual,logical,ANY,ANY-method Man page
[,pgVirtual,numeric,ANY,ANY-method Man page
[[,pgVirtual,ANY,ANY-method Man page
addGenomes Man page
addGenomes,pgVirtual,pgVirtual-method Man page
addGroupInfo Man page
addGroupInfo,pgVirtual-method Man page
addOrgInfo Man page
addOrgInfo,pgVirtual-method Man page
as Man page
cdhitGrouping Man page
cdhitGrouping,pgVirtual-method Man page
collapseParalogues Man page
collapseParalogues,pgVirtual-method Man page
defaults Man page
defaults,pgVirtual-method Man page
defaults<- Man page
defaults<-,pgVirtual-method Man page
geneLocation Man page
geneLocation,pgInMemLoc-method Man page
geneNames Man page
geneNames,pgFull-method Man page
geneNames,pgLM-method Man page
geneNames,pgSlim-method Man page
geneNames<- Man page
geneNames<-,pgFull-method Man page
geneNames<-,pgLM-method Man page
geneNames<-,pgSlim-method Man page
geneWidth Man page
geneWidth,pgFull-method Man page
geneWidth,pgLM-method Man page
geneWidth,pgSlim-method Man page
genes Man page
genes,pgFull,character-method Man page
genes,pgFull,missing-method Man page
genes,pgLM,character-method Man page
genes,pgLM,missing-method Man page
genes,pgSlim,character-method Man page
genes,pgSlim,missing-method Man page
getNeighborhood Man page
getNeighborhood,pgVirtualLoc-method Man page
getRep Man page
getRep,pgVirtual,character-method Man page
gpcGrouping Man page
gpcGrouping,pgVirtual-method Man page
graphGrouping Man page
graphGrouping,pgVirtual-method Man page
groupGenes Man page
groupGenes,pgInMem-method Man page
groupGenes,pgVirtual-method Man page
groupInfo Man page
groupInfo,pgInMem-method Man page
groupInfo<- Man page
groupInfo<-,pgInMem-method Man page
groupNames Man page
groupNames,pgInMem-method Man page
groupNames<- Man page
groupNames<-,pgInMem-method Man page
groupStat Man page
groupStat,pgVirtual-method Man page
hasGeneGroups Man page
hasGeneGroups,pgVirtual-method Man page
hasGeneInfo Man page
hasGeneInfo,pgVirtual-method Man page
hasParalogueLinks Man page
hasParalogueLinks,pgVirtual-method Man page
internal-groupGenes Man page
internal-mergePangenomes Man page
internal-metadata Man page
kmerLink Man page
kmerLink,pgVirtual-method Man page
kmerSimilarity Man page
kmerSimilarity,pgVirtual-method Man page
kmerSplit Man page
kmerSplit,pgVirtual-method Man page
length,pgVirtual-method Man page
manualGrouping Man page
manualGrouping,pgVirtual,integer-method Man page
manualGrouping,pgVirtual,list-method Man page
mergePangenomes Man page
mergePangenomes,pgFull,pgFull-method Man page
mergePangenomes,pgFullLoc,pgFullLoc-method Man page
mergePangenomes,pgInMem,pgInMem-method Man page
mergePangenomes,pgLM,pgLM-method Man page
mergePangenomes,pgLMLoc,pgLMLoc-method Man page
mergePangenomes,pgSlimLoc,pgSlimLoc-method Man page
nGeneGroups Man page
nGeneGroups,pgVirtual-method Man page
nGenes Man page
nGenes,pgVirtual-method Man page
nOrganisms Man page
nOrganisms,pgVirtual-method Man page
neighborhoodSplit Man page
neighborhoodSplit,pgVirtualLoc-method Man page
orgInfo Man page
orgInfo,pgInMem-method Man page
orgInfo<- Man page
orgInfo<-,pgInMem-method Man page
orgNames Man page
orgNames,pgInMem-method Man page
orgNames<- Man page
orgNames<-,pgInMem-method Man page
orgStat Man page
orgStat,pgVirtual-method Man page
pangenome Man page
pcGraph Man page
pcGraph,pgVirtualLoc-method Man page
pgFull-class Man page
pgFullLoc-class Man page
pgInMem-class Man page
pgInMemLoc-class Man page
pgLM-class Man page
pgLMLoc-class Man page
pgMatrix Man page
pgMatrix,pgVirtual-method Man page
pgSlim-class Man page
pgSlimLoc-class Man page
pgVirtual-class Man page
pgVirtualLoc-class Man page
plotEvolution Man page
plotEvolution,pgVirtual-method Man page
plotGroup Man page
plotGroup,pgVirtual-method Man page
plotNeighborhood Man page
plotNeighborhood,pgVirtualLoc-method Man page
plotSimilarity Man page
plotSimilarity,pgVirtual-method Man page
plotStat Man page
plotStat,pgVirtual-method Man page
plotTree Man page
plotTree,pgVirtual-method Man page
readAnnot Man page
removeGene Man page
removeGene,pgInMem,missing,missing,missing,numeric-method Man page
removeGene,pgVirtual,character,character,missing,missing-method Man page
removeGene,pgVirtual,character,missing,missing,missing-method Man page
removeGene,pgVirtual,character,numeric,missing,missing-method Man page
removeGene,pgVirtual,missing,character,missing,missing-method Man page
removeGene,pgVirtual,missing,character,missing,numeric-method Man page
removeGene,pgVirtual,missing,missing,character,missing-method Man page
removeGene,pgVirtual,missing,missing,character,numeric-method Man page
removeGene,pgVirtual,missing,missing,numeric,missing-method Man page
removeGene,pgVirtual,missing,missing,numeric,numeric-method Man page
removeGene,pgVirtual,missing,numeric,missing,missing-method Man page
removeGene,pgVirtual,missing,numeric,missing,numeric-method Man page
reportGroupChanges Man page
seqToGeneGroup Man page
seqToGeneGroup,pgInMem-method Man page
seqToOrg Man page
seqToOrg,pgInMem-method Man page
setGroupInfo Man page
setGroupInfo,pgInMem-method Man page
setOrgInfo Man page
setOrgInfo,pgInMem-method Man page
show,pgVirtual-method Man page
translated Man page
translated,pgVirtual-method Man page
variableRegions Man page
variableRegions,pgVirtualLoc-method Man page
thomasp85/FindMyFriends documentation built on May 31, 2019, 10:47 a.m.