seqToGeneGroup: Get gene-to-genegroup relationship

Description Usage Arguments Value Methods (by class) Note See Also Examples

Description

This method returns the group membership for each gene in the pangenome as a vector of indices. Element 1 corresponds to gene 1 and the value is the index of the corresponding gene group. If gene groups have yet to be defined it returns a vector of length 0.

Usage

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seqToGeneGroup(object)

## S4 method for signature 'pgInMem'
seqToGeneGroup(object)

Arguments

object

A pgVirtual subclass

Value

An integer vector with an element for each gene in the pangenome.

Methods (by class)

Note

Required for extending the class system of FindMyFriends

See Also

seqToOrg for gene-to-organism relationship

Examples

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testPG <- .loadPgExample(withGroups=TRUE)

# Have a look at what the first six genes belongs to
head(seqToGeneGroup(testPG))

thomasp85/FindMyFriends documentation built on April 25, 2020, 1:06 p.m.