getMSGFpar | R Documentation |
The string representation is defined as the arguments that should get appended to the call when running MSGF+ in the terminal/command prompt
getMSGFpar(object)
object |
An msgfPar object or a related object |
A string that can be appended to a system()
call to specify
the parameters for the MSGF+ analysis
msgfPar-class
parameters <- msgfPar(
database=system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta'),
tolerance='20 ppm',
instrument='TOF',
enzyme='Lys-C'
)
getMSGFpar(parameters)
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