msgfParProtocol-class: A class handling protocol choice

In thomasp85/MSGFplus: An interface between R and MS-GF+

A class handling protocol choice

Description

This class defines a protocol and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParProtocol'
show(object)

## S4 method for signature 'msgfParProtocol'
length(x)

## S4 method for signature 'msgfParProtocol'
getMSGFpar(object)

msgfParProtocol(protocol)

Arguments

object	An msgfParProtocol object
x	An msgfParProtocol object
protocol	An integer or string specifying the protocol to use.

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParProtocol() An msgfParProtocol object.

Methods (by generic)

• show: Short summary of msgfParProtocol object

• length: Report the length of an msgfParProtocol object

• getMSGFpar: Get system compliant function call

Slots

protocol

An integer specifying a specific protocol type

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

protocol <- msgfParProtocol(0)
protocol <- msgfParProtocol('No protocol')

thomasp85/MSGFplus documentation built on Oct. 2, 2024, 9:26 a.m.