msgfParFragmentation-class: A class handling Fragmentation types

In thomasp85/MSGFplus: An interface between R and MS-GF+

A class handling Fragmentation types

Description

This class defines a fragmentation type and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParFragmentation'
show(object)

## S4 method for signature 'msgfParFragmentation'
length(x)

## S4 method for signature 'msgfParFragmentation'
getMSGFpar(object)

msgfParFragmentation(method)

Arguments

object	An msgfParFragmentation object
x	An msgfParFragmentation object
method	An integer specifying the method

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParFragmentation() An msgfParFragmentation object.

Methods (by generic)

• show: Short summary of msgfParFragmentation object

• length: Report the length of an msgfParFragmentation object

• getMSGFpar: Get system compliant function call

Slots

method

An integer between 0 and 4 giving the selected method

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParLengthRange-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

fragmentation <- msgfParFragmentation(1)
fragmentation <- msgfParFragmentation('CID')

thomasp85/MSGFplus documentation built on Oct. 2, 2024, 9:26 a.m.