msgfParLengthRange-class: A class handling length ranges

In thomasp85/MSGFplus: An interface between R and MS-GF+

A class handling length ranges

Description

This class defines a length range and provides methods to get correct system call parameters.

Usage

## S4 method for signature 'msgfParLengthRange'
show(object)

## S4 method for signature 'msgfParLengthRange'
length(x)

## S4 method for signature 'msgfParLengthRange'
getMSGFpar(object)

msgfParLengthRange(value)

Arguments

object	An msgfParLengthRange object
x	An msgfParLengthRange object
value	A numeric vector of length 2. The first element must be smaller than the last

Value

For length() An integer.

For getMSGFpar() A string.

For msgfParLengthRange() An msgfParLengthRange object.

Methods (by generic)

• show: Short summary of msgfParLengthRange object

• length: Report the length of an msgfParLengthRange object

• getMSGFpar: Get system compliant function call

Slots

value

A numeric vector of length 2 describing the upper and lower bounds of the length range

See Also

Other msgfParClasses: msgfPar-class, msgfParChargeRange-class, msgfParEnzyme-class, msgfParFragmentation-class, msgfParInstrument-class, msgfParIsotopeError-class, msgfParMatches-class, msgfParModification-class, msgfParModificationList-class, msgfParNtt-class, msgfParProtocol-class, msgfParTda-class, msgfParTolerance-class, msgfPar

Examples

lengths <- msgfParLengthRange(c(6, 40))

thomasp85/MSGFplus documentation built on Oct. 2, 2024, 9:26 a.m.