argonansiWeb-class: An S4 class to contain all metabolomics and functional input...

argonansiWeb-classR Documentation

An S4 class to contain all metabolomics and functional input data as well as a dictionary to link them. Can only be used with the argonaut library.

Description

argonansiWeb is the main container that will hold your input data thoughout the anansi pipeline.

Slots

tableY

A matrix of metabolomics data. Rows are samples and columns are features.

tableX

A stratified feature table containing features of interest. dim1 should be samples, dim2 should be features and dim3 should be subtypes.

dictionary

A binary adjacency matrix. Typically generated using the weaveWebFromTables() function.


thomazbastiaanssen/anansi documentation built on Feb. 9, 2025, 2:07 p.m.