prune_dictionary_for_exclusivity: Kick out particularly large groups before wrangling the...
In thomazbastiaanssen/anansi: Annotation-Based Analysis of Specific Interactions
View source: R/weaveWebFromTables.R
prune_dictionary_for_exclusivity R Documentation
Kick out particularly large groups before wrangling the dictionary list into a binary adjacency matrix.
Description
Takes the anansi dictionary in list format and prunes the larges groups based on sd from the median.
Usage
prune_dictionary_for_exclusivity(dict_list, max_sds = 3, verbose = TRUE)
Arguments
dict_list
A list that has tableY names as entries in the case of mode == "interaction" and group names in the case of mode == "membership". For general use, we recommend using the one provided in this package.
max_sds
a numeric, how many standard deviantions larger than the group median are groups allowed to be?
verbose
A boolean. Toggles whether to print diagnostic information while running. Useful for debugging errors on large datasets.
Value
a pruned anansi dictionary list object.
thomazbastiaanssen/anansi documentation built on Feb. 9, 2025, 2:07 p.m.
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View source: R/weaveWebFromTables.R
| prune_dictionary_for_exclusivity | R Documentation |
Kick out particularly large groups before wrangling the dictionary list into a binary adjacency matrix.
Description
Takes the anansi dictionary in list format and prunes the larges groups based on sd from the median.
Usage
prune_dictionary_for_exclusivity(dict_list, max_sds = 3, verbose = TRUE)
Arguments
dict_list |
A list that has tableY names as entries in the case of mode == "interaction" and group names in the case of mode == "membership". For general use, we recommend using the one provided in this package. |
max_sds |
a numeric, how many standard deviantions larger than the group median are groups allowed to be? |
verbose |
A boolean. Toggles whether to print diagnostic information while running. Useful for debugging errors on large datasets. |
Value
a pruned anansi dictionary list object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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