extractFastqcBaseNs: Extract FastQC
In timflutre/rutilsfastqc: Utilitary functions to handle output from FastQC
Description
Usage
Arguments
Value
Author(s)
Description
Returns the N count along the sequences per entry in a set of zip archives generated by FastQC.
To be used after readFastqcZips().
When reads are long, FastQC can average N count over a given range, e.g. over two successive bases, such as "11-12".
In such a case, because the ranges can be different for different fastq files in all.qc, this function will set N count to the first base of the range in the ouput, here "11", the other, here "12", will get NA.
Usage
1
extractFastqcBaseNs(all.qc)
Arguments
all.qc
return value from readFastqcZips()
Value
numeric matrix with entries in rows and positions along sequences in columns
Author(s)
Timothee Flutre [cre,aut]
timflutre/rutilsfastqc documentation built on May 31, 2019, 2:16 p.m.
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Description Usage Arguments Value Author(s)
Description
Returns the N count along the sequences per entry in a set of zip archives generated by FastQC.
To be used after readFastqcZips().
When reads are long, FastQC can average N count over a given range, e.g. over two successive bases, such as "11-12".
In such a case, because the ranges can be different for different fastq files in all.qc, this function will set N count to the first base of the range in the ouput, here "11", the other, here "12", will get NA.
Usage
1 | extractFastqcBaseNs(all.qc)
|
Arguments
all.qc |
return value from readFastqcZips() |
Value
numeric matrix with entries in rows and positions along sequences in columns
Author(s)
Timothee Flutre [cre,aut]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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