extractFastqcQuals: Extract FastQC
In timflutre/rutilsfastqc: Utilitary functions to handle output from FastQC
Description
Usage
Arguments
Value
Author(s)
Description
Return the number, or percentage, of sequences per quality score per entry in a set of zip archives generated by FastQC.
To be used after readFastqcZips().
Usage
1
extractFastqcQuals(all.qc, perc = FALSE, nreads = NULL)
Arguments
all.qc
return value from readFastqcZips()
perc
return percentage of sequences if TRUE, number of sequences otherwise
nreads
return value from nreads.fastqc(), required if perc=TRUE
Value
numeric matrix with entries in rows and number (percentage) of sequences per quality in columns
Author(s)
Timothee Flutre [cre,aut]
timflutre/rutilsfastqc documentation built on May 31, 2019, 2:16 p.m.
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Description Usage Arguments Value Author(s)
Description
Return the number, or percentage, of sequences per quality score per entry in a set of zip archives generated by FastQC. To be used after readFastqcZips().
Usage
1 | extractFastqcQuals(all.qc, perc = FALSE, nreads = NULL)
|
Arguments
all.qc |
return value from readFastqcZips() |
perc |
return percentage of sequences if TRUE, number of sequences otherwise |
nreads |
return value from nreads.fastqc(), required if perc=TRUE |
Value
numeric matrix with entries in rows and number (percentage) of sequences per quality in columns
Author(s)
Timothee Flutre [cre,aut]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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