plotFastqcSeqLengths: Plot FastQC

In timflutre/rutilsfastqc: Utilitary functions to handle output from FastQC

Description

Plot the distribution of sequence lengths per entry in a set of zip archives generated by FastQC. To be used after extractFastqcSeqLengths().

Usage

plotFastqcSeqLengths(seq.length, max.datasets.per.plot = 25,
  lowest.len = NULL, highest.len = NULL, main = "Quality control",
  ylab = "Number of sequences", legend.x = "topleft", legend.y = NULL,
  legend.cex = 1, add.2nd.yaxis = TRUE)

Arguments

seq.length	return value from extractFastqcSeqLengths()
max.datasets.per.plot	max number of datasets on the same plot
lowest.len	lowest sequence length for the y-axis
highest.len	highest sequence length for the y-axis
main	an overall title for the plot
ylab	label for the y-axis
legend.x	x coordinate to position the legend (no legend if NULL)
legend.y	y coordinate to position the legend
legend.cex	numeric character expansion factor for legend labels
add.2nd.yaxis	add a 2nd y-axis on the right side of the plot

Value

nothing

Author(s)

Timothee Flutre [cre,aut], Nicolas Rode [ctb]

timflutre/rutilsfastqc documentation built on May 31, 2019, 2:16 p.m.