Description Usage Arguments Value Author(s)
Plot the distribution of sequence lengths per entry in a set of zip archives generated by FastQC. To be used after extractFastqcSeqLengths().
1 2 3 4 | plotFastqcSeqLengths(seq.length, max.datasets.per.plot = 25,
lowest.len = NULL, highest.len = NULL, main = "Quality control",
ylab = "Number of sequences", legend.x = "topleft", legend.y = NULL,
legend.cex = 1, add.2nd.yaxis = TRUE)
|
seq.length |
return value from extractFastqcSeqLengths() |
max.datasets.per.plot |
max number of datasets on the same plot |
lowest.len |
lowest sequence length for the y-axis |
highest.len |
highest sequence length for the y-axis |
main |
an overall title for the plot |
ylab |
label for the y-axis |
legend.x |
x coordinate to position the legend (no legend if NULL) |
legend.y |
y coordinate to position the legend |
legend.cex |
numeric character expansion factor for legend labels |
add.2nd.yaxis |
add a 2nd y-axis on the right side of the plot |
nothing
Timothee Flutre [cre,aut], Nicolas Rode [ctb]
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