FcsToTibble: Takes a file as input and returns a data frame of cells by...
In tjburns08/Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data
Description
Usage
Arguments
Value
Examples
Description
This function is a quick way to take the exprs content of
a fcs file, do an asinh transform, and create a tibble data structure
that can be further manipulated. Our default transform is asinh, but
you just have to change the transform to anything else, and you'll
get the raw data. This function is used in the main function
process.multiple.files
Usage
1
FcsToTibble(file, transform = "asinh")
Arguments
file
the fcs file containing cell infomration
transform
if set to asinh, then asinh transforms with scale arg 5
Value
tibble of info contained within the fcs file
Examples
1
2
3
file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
package = "Sconify")
FcsToTibble(file)
tjburns08/Sconify documentation built on May 31, 2019, 8:56 a.m.
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Description Usage Arguments Value Examples
Description
This function is a quick way to take the exprs content of a fcs file, do an asinh transform, and create a tibble data structure that can be further manipulated. Our default transform is asinh, but you just have to change the transform to anything else, and you'll get the raw data. This function is used in the main function process.multiple.files
Usage
1 | FcsToTibble(file, transform = "asinh")
|
Arguments
file |
the fcs file containing cell infomration |
transform |
if set to asinh, then asinh transforms with scale arg 5 |
Value
tibble of info contained within the fcs file
Examples
1 2 3 | file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
package = "Sconify")
FcsToTibble(file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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