GetMarkerNames: Takes in an example file as input and returns all marker...
In tjburns08/Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data
Description
Usage
Arguments
Value
Examples
Description
This is a quick way to get a list of preferred marker names.
This outputs a csv file containing all markers in the dataset in the name
format that will be recognized by downstream functions. You manually
alter this list to remove and/or categorize the said markers. The file
can then be read in (stringsAsFactors = FALSE) to give you the marker
list of interest. In particular, name the top of the column as "markers" if
you're just altering the list. If you're doing to divide it into static
and functional markers, produce two columns, naming them respectively.
Usage
1
Arguments
file
the fcs file of interest
Value
the list of markers of interest. This is to be written as a csv
Examples
1
2
3
file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
package = "Sconify")
GetMarkerNames(file)
tjburns08/Sconify documentation built on May 31, 2019, 8:56 a.m.
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Description Usage Arguments Value Examples
Description
This is a quick way to get a list of preferred marker names. This outputs a csv file containing all markers in the dataset in the name format that will be recognized by downstream functions. You manually alter this list to remove and/or categorize the said markers. The file can then be read in (stringsAsFactors = FALSE) to give you the marker list of interest. In particular, name the top of the column as "markers" if you're just altering the list. If you're doing to divide it into static and functional markers, produce two columns, naming them respectively.
Usage
1 |
Arguments
file |
the fcs file of interest |
Value
the list of markers of interest. This is to be written as a csv
Examples
1 2 3 | file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
package = "Sconify")
GetMarkerNames(file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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