Files in tjburns08/Sconify
A toolkit for performing KNN-based statistics for flow and mass cytometry data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/data.R
R/k.selection.R
R/knn.and.statistics.R
R/post.processing.R
R/process.files.R
README.md
data/bz.gmcsf.final.norm.scale.rda
data/bz.gmcsf.final.rda
data/exist.rda
data/funct.markers.rda
data/input.markers.rda
data/markers.rda
data/wand.combined.rda
data/wand.final.rda
data/wand.ideal.k.rda
data/wand.il7.rda
data/wand.scone.rda
inst/NEWS.txt
inst/extdata/Bendall_et_al_Cell_Sample_C_IL7.fcs
inst/extdata/Bendall_et_al_Cell_Sample_C_basal.fcs
inst/extdata/markers.csv
man/AddTsne.Rd
man/FcsToTibble.Rd
man/Fnn.Rd
man/GetKnnDe.Rd
man/GetMarkerNames.Rd
man/Impute.Rd
man/ImputeTesting.Rd
man/LogTransformQ.Rd
man/MakeHist.Rd
man/MakeKnnList.Rd
man/MeaningOfLife.Rd
man/MultipleDonorStatistics.Rd
man/ParseMarkers.Rd
man/PostProcessing.Rd
man/ProcessMultipleFiles.Rd
man/QCorrectionThresholding.Rd
man/QuantNormalize.Rd
man/QuantNormalizeElements.Rd
man/RunStatistics.Rd
man/SconeValues.Rd
man/SplitFile.Rd
man/StringToNumbers.Rd
man/SubsampleAndTsne.Rd
man/TsneVis.Rd
man/bz.gmcsf.final.Rd
man/bz.gmcsf.final.norm.scale.Rd
man/exist.Rd
man/funct.markers.Rd
man/input.markers.Rd
man/markers.Rd
man/wand.combined.Rd
man/wand.final.Rd
man/wand.ideal.k.Rd
man/wand.il7.Rd
man/wand.scone.Rd
tests/testthat.R
tests/testthat/test.file.processing.R
tests/testthat/test.k.selection.R
tests/testthat/test.knn.and.statistics.R
tests/testthat/test.post.processing.R
vignettes/DataQuality.Rmd
vignettes/FindingIdealK.Rmd
vignettes/Step1.PreProcessing.Rmd
vignettes/Step2.TheSconeWorkflow.Rmd
vignettes/Step3.PostProcessing.Rmd
vignettes/modified.markers.csv.example.png
vignettes/original.markers.csv.example.png
vignettes/sconify_proof_of_concept.png
vignettes/sconify_visual_explanation.png
