Man pages for tkonopka/MultiPattern
Multi-Pattern Discovery Framework

canberra.MultiPatternPluginAdd a set of configurations to a MultiPattern object
checkArgClasscheck that an object is of the epected class, or stop
checkNotNullcheck that object x is not null, or stop
dbscan.MultiPatternPluginAdd a set of configurations to a MultiPattern object
dist.canberraCanberra distance
dist.clustDistance that incorporates weights from a clustering (hclust...
dist.correlationCompute dissimilarity using correlation
dist.dbscanDistance that incorporates weights from a dbscan clustering
dist.euclideanEuclidean distance
dist.hammingHamming distance
dist.log2euclideanEuclidean distance of log2 transformed values
dist.manhattanManhattan distance
dist.pc1Distance using 1st principal component from PCA
dist.pearsonCompute distance using pearson correlation r
dist.spearmanCompute distance using spearman rho
euclidean.MultiPatternPluginAdd a set of configurations to a MultiPattern object
hamming.MultiPatternPluginAdd a set of configurations to a MultiPattern object
hclust.MultiPatternPluginAdd a set of configurations to a MultiPattern object
ica.MultiPatternPluginAdd a set of configurations to a MultiPattern object
manhattan.MultiPatternPluginAdd a set of configurations to a MultiPattern object
MPaddConfigAdd one or more cluster configurations into a MultiPattern...
MPaddDataAdd a dataset into a MultiPattern configuration object
MPchangeSettingsChange settings encoded in a MultiPattern object
MPcutreeProvides a cut of hclust into k clusters
MPdata1LToy dataset with one group (large)
MPdata1MToy dataset with one group (medium)
MPdata1SToy dataset with one group (small)
MPdata2LToy dataset with two groups (large)
MPdata2MToy dataset with two groups (medium)
MPdata2SToy dataset with two groups (small)
MPdata3LToy dataset with three groups (large)
MPdata3MToy dataset with three groups (medium)
MPdata3SToy dataset with three groups (small)
MPdata4LToy dataset with four groups (large)
MPdata4MToy dataset with four groups (medium)
MPdata4SToy dataset with four groups (small)
MPdata6LToy dataset with six groups (large)
MPdata6MToy dataset with six groups (medium)
MPdata6SToy dataset with six groups (small)
MPdata9LToy dataset with nine groups (large)
MPdata9MToy dataset with nine groups (medium)
MPdata9SToy dataset with nine groups (small)
MPdefaultSettingsSummary of default settings for new MultiPattern objects
MPdistFactoryGenerates a function with syntax f(x) that returns a dist...
MPdistImputeImpute values for NAs in a dist object
MPeasyConfigAdd predefined configuration types to a MultiPattern...
MPgetAll2Subspacesobtain a list of all pairs from a set
MPgetAverageMetaDistanceCompute a meta distance object from an MP object. Uses...
MPgetDistancesRun MultiPattern analysis.
MPgetMapCreate a map for a distance object/matrix
MPgetMetaDistanceCompare MultiPattern similarity matrices
MPgetRandomSubspacesProduce a list of randomly selected feature sets
MPgetRepresentativesIdentify representative points from a distance object
MPimputeNAsImpute values for NAs in a matrix or other object
MPlistPluginsGet of MultiPattern plugins available
MPmakePrepFunctionCreate a function for preprocessing a dataset before...
MPmatrixColNormNormalize a matrix column-wise by median shift and division...
MPnewCreate a basic MP object
MPPartitionFeaturesPartition features in a data matrix into categories like...
MPplotmapCustom function to draw mds maps. Uses Rcssplot and some hard...
MPplotScatterWithKplot a 2D scatter diagram with clusters in various style
MPplotScatterWithLinksplot a 2D scatter diagram with clusters in various style
MPrandomizeMatrixPermute values in a matrix
MPrankNeighborsCompute non-parametric neighborhoods of data elements using...
MPremoveRemove data or configuration components from a MultiPattern...
MPsquarelimCreate equal size xlim and ylim intervals from x,y values
MPsuggestConfigSuggest a set of clustering analyses for a dataset
MPsuggestTopFeaturesMake a suggestion for interesting features in a dataset based...
nmf.MultiPatternPluginAdd a set of configurations to a MultiPattern object
pam.MultiPatternPluginAdd a set of configurations to a MultiPattern object
pca.ica.helperhelper function to fastica and pca plugins; first few...
pca.MultiPatternPluginAdd a set of configurations to a MultiPattern object
pearson.MultiPatternPluginAdd a set of configurations to a MultiPattern object
print.MultiPatternPrint a summary of a MP configuration object
print.MultiPatternSettingsPrint a summary of a MP distances objects
print.MultiPatternSimilaritiesPrint a summary of a MP distances objects
rpca.MultiPatternPluginAdd a set of configurations to a MultiPattern object
spearman.MultiPatternPluginAdd a set of configurations to a MultiPattern object
subspace1.MultiPatternPluginAdd a set of configurations to a MultiPattern object
subspace2.MultiPatternPluginAdd a set of configurations to a MultiPattern object
subspacer.MultiPatternPluginAdd a set of configurations to a MultiPattern object
tkonopka/MultiPattern documentation built on Sept. 2, 2018, 6:23 p.m.