Man pages for tkonopka/MultiPattern
Multi-pattern discovery in R

canberra.MultiPatternPluginAdd a set of configurations to an MultiPattern object
dist.canberraCanberra distance
dist.clustDistance that incorporates weights from a clustering (hclust...
dist.euclideanEuclidean distance
dist.log2euclideanEuclidean distance of log2 transformed values
dist.manhattanManhattan distance
dist.pc1Distance using 1st principal component from PCA
dist.permRandom distance obtained through permutation of an input...
dist.rbetaRandom distance using beta distribution
dist.rnormRandom distance
dist.rnorm0Random distance using a normal distribution
dist.spearmanCompute distance using spearman rho
euclidean.MultiPatternPluginAdd a set of configurations to an MultiPattern object
hclust.MultiPatternPluginAdd a set of configurations to an MultiPattern object
manhattan.MultiPatternPluginAdd a set of configurations to an MultiPattern object
MPaddConfigAdd one or more cluster configurations into a MultiPattern...
MPaddDataAdd a dataset into a MultiPattern configuration object
MPchangeSettingsChange settings encoded in a MultiPattern object
MPcutreeProvides a cut of hclust into k clusters
MPdata2LToy dataset with two groups (large)
MPdata2MToy dataset with two groups (medium)
MPdata2SToy dataset with two groups (small)
MPdata3LToy dataset with three groups (large)
MPdata3MToy dataset with three groups (medium)
MPdata3SToy dataset with three groups (small)
MPdata4LToy dataset with four groups (large)
MPdata4MToy dataset with four groups (medium)
MPdata4SToy dataset with four groups (small)
MPdata6LToy dataset with six groups (large)
MPdata6MToy dataset with six groups (medium)
MPdata6SToy dataset with six groups (small)
MPdata9LToy dataset with nine groups (large)
MPdata9MToy dataset with nine groups (medium)
MPdata9SToy dataset with nine groups (small)
MPdefaultSettingsSummary of default settings for new MultiPattern objects
MPdistFactoryGenerates a function with syntax f(x) that returns a dist...
MPdistImputeImpute values for NAs in a dist object
MPdrawScaleLegendDraw a vertical recrangle with a color scale and labels
MPeasyConfigAdd predefined configuration types to a MultiPattern...
MPgetAll2Subspacesobtain a list of all pairs from a set
MPgetAverageMetaDistanceCompute a meta distance object from an MP object. Uses...
MPgetDistancesRun MultiPattern analysis.
MPgetKNearestExtract the k items that are nearest to specified seeds
MPgetMapCreate a map for a distance object/matrix
MPgetMetaDistanceCompare MultiPattern similarity matrices
MPgetNeighborSetGet a set of nearest neighbors (ranked)
MPgetRandomSubspacesProduce a list of randomly selected feature sets
MPgetRepresentativesIdentify representative points from a distance object
MPimputeNAsImpute values for NAs in a matrix or other object
MPlistPluginsGet of MultiPattern plugins available
MPmakePrepFunctionCreate a function for preprocessing a dataset before...
MPmatrixColNormNormalize a matrix column-wise by median shift and division...
MPnewCreate a basic MP object
MPplotBasicHeatPlot a basic heat map
MPplotmapCustom function to draw mds maps. Uses Rcssplot and some hard...
MPplotPairwiseSetsplot pairwise overlaps summaries
MPplotScatterWithKplot a 2D scatter diagram with clusters in various style
MPplotScatterWithLinksplot a 2D scatter diagram with clusters in various style
MPrandomizeMatrixPermute values in a matrix
MPrankNeighborsCompute non-parametric neighborhoods of data elements using...
MPrankWholeTransform a dissimilariy matrix using ranks
MPremoveRemove data or configuration components from a MultiPattern...
MPsquarelimCreate equal size xlim and ylim intervals from x,y values
MPsuggestConfigSuggest a set of clustering analyses for a dataset
MPsuggestTopFeaturesMake a suggestion for interesting features in a dataset based...
MPval2ColConvert a number into a color using transparency
MPvalMat2ColMatConvert a matrix of values (range [-Inf,Inf] to colors using...
nmf.MultiPatternPluginAdd a set of configurations to an MultiPattern object
pam.MultiPatternPluginAdd a set of configurations to an MultiPattern object
pca.MultiPatternPluginAdd a set of configurations to an MultiPattern object
print.MultiPatternPrint a summary of a MP configuration object
print.MultiPatternSettingsPrint a summary of a MP distances objects
print.MultiPatternSimilaritiesPrint a summary of a MP distances objects
random.MultiPatternPluginAdd a set of configurations to an MultiPattern object
rpca.MultiPatternPluginAdd a set of configurations to an MultiPattern object
spearman.MultiPatternPluginAdd a set of configurations to an MultiPattern object
subspace1.MultiPatternPluginAdd a set of configurations to an MultiPattern object
subspace2.MultiPatternPluginAdd a set of configurations to an MultiPattern object
subspacer.MultiPatternPluginAdd a set of configurations to an MultiPattern object
tkonopka/MultiPattern documentation built on May 27, 2017, 10:34 a.m.