MPdefaultSettings: Summary of default settings for new MultiPattern objects

In tkonopka/MultiPattern: Multi-Pattern Discovery Framework

Description

See details for a description of each component

Usage

MPdefaultSettings

Format

An object of class list of length 14.

Details

num.random: number of random configurations

num.PCs: number of PCA components

num.ICs: number of ICA components

nmf.rank: number of NMF components

nmf.bg: background value added to avoid null rows in NMF

rpca.term.delta: used in rpca analysis (smaller than default for speed)

clust.k: max number of clusters to use in easyConfig reg and alt configurations

subspace.num.random: number of random subspaces

subspace.d.random: number/proportion of features for subspace analysis

alpha: exponent for similarity transformation for meta-similarities

beta: determines Lbeta distance for meta-similarities

subsample.N: number of observations to use in subsample/bootstrap

subsample.R: number of subsampling/bootstrap repetitions

tkonopka/MultiPattern documentation built on May 31, 2019, 3:45 p.m.