Man pages for tkostas/viewMQ
Visualization of MaxQuant output files for proteomics studies
| add_groups | Add groups based on experiment name. |
| experiments | View names of the different experiments |
| MQ_evidence_Andromeda_score | Plot Andromeda score distribution using MaxQuant output |
| MQ_evidence_charge_state | Charge state distribution using MaxQuant output |
| MQ_evidence_intensity_boxplot | Plot peptide intensities for individual experiments using... |
| MQ_evidence_missed_cleavages | Plot number of missed cleavages using MaxQuant output |
| MQ_evidence_modifications | Peptide modifications distribution using MaxQuant output |
| MQ_evidence_MSMS_count | Plot MS/MS count distribution using MaxQuant output |
| MQ_evidence_pept_int | Plot peptide intensity distrubition using MaxQuant output |
| MQ_evidence_ppm_error | Plot ppm error distribution using MaxQuant output |
| MQ_evidence_ppm_error_boxplot | Plot ppm error intensities for individual experiments using... |
| MQ_evidence_resolution | Plot instrument resolution distribution using MaxQuant output |
| MQ_evidence_RT | Plot run retention time distribution using MaxQuant output |
| MQ_evidence_RT_length | Plot peptide retention time distribution using MaxQuant... |
| MQ_remove_bysite | Remove proteins indentified only by modified peptides from... |
| MQ_remove_contaminants | Remove contaminants from MaxQuant output files |
| MQ_remove_reverse | Remove reverse sequences from MaxQuant output files |
| MQ_summary_isopatterns_seq | Number of isotopic patterns sequenced (z > 1) (read from... |
| MQ_summary_isopatterns_seq_percent | Percent of isotopic patterns sequenced (z > 1) (read from... |
| MQ_summary_isopatterns_seq_percent_rep | Percent of isotopic patterns sequenced repeatedly (z > 1)... |
| MQ_summary_MS1_spectra | Number of MS1 spectra aquired (read from MaxQuant... |
| MQ_summary_MS2_id | Number of MS2 spectra identified (read from MaxQuant... |
| MQ_summary_MS2_spectra | Number of MS2 spectra aquired (read from MaxQuant... |
| MQ_summary_MSMSid_percent | Percent of MSMS spectra identified using MaxQuant summary... |
| MQ_summary_MSvsMSMS | View number of MS1 and MS2 spectra per sample from... |
| MQ_summary_peaks | Number of peaks identified (read from MaxQuant summary.txt) |
| MQ_summary_peaks_seq | Number of peaks sequenced (read from MaxQuant summary.txt) |
| MQ_summary_peaks_seq_percent | Percent of peaks sequenced (read from MaxQuant summary.txt) |
| MQ_summary_pept_id | Number of peptide sequences identified (read from MaxQuant... |
