MQ_evidence_charge_state: Charge state distribution using MaxQuant output

In tkostas/viewMQ: Visualization of MaxQuant output files for proteomics studies

Description

Uses the output from MaxQuant (evidence.txt) to create a bargraph of charge state distribution as a total or splitted by experiment.

Usage

MQ_evidence_charge_state(x, per_sample = FALSE, ncol = 5)

Arguments

x	The filtered 'evidence.txt' file. Use MQ_remove_CR first to remove contaminants and reverse hits.
per_sample	Logical with default value equal to FALSE. By default a summary from all experiments will be plotted. If set to TRUE, individual experiments will be shown in different graphs.
ncol	Number of columns when plotting individual experiments. Default value is 5.

Examples

# plot charge state as a total
MQ_evidence_charge_state(filtered_evidence_output, per_sample = TRUE, ncol = 6)

#plot charge state per experiment
MQ_evidence_charge_state(filtered_evidence_output, per_sample = TRUE, ncol = 6)

tkostas/viewMQ documentation built on May 6, 2019, 6:02 p.m.