API for tnaake/MatrixQCvis
Shiny-based interactive data-quality exploration for omics data
| Global functions | |
|---|---|
| .initialize_server | Source code |
| ECDF | Man page Source code |
| ECDFServer | Source code |
| MAplot | Man page Source code |
| MAvalues | Man page Source code |
| barplotMeasuredMissingSampleServer | Source code |
| barplotSamplesMeasuredMissing | Man page Source code |
| batchCorrectionAssay | Man page Source code |
| boxPlotServer | Source code |
| boxPlotUIServer | Source code |
| box_meanSdUI | Source code |
| choiceAssaySE | Source code |
| colDataServer | Source code |
| contrastMatrixServer | Source code |
| contrastMatrixUIServer | Source code |
| createBoxplot | Man page Source code |
| createDfFeature | Man page Source code |
| createLandingPage | Source code |
| cv | Man page Source code |
| cvFeaturePlot | Man page Source code |
| cvServer | Source code |
| dimRedServer | Source code |
| dimensionReduction | Man page Source code |
| dimensionReductionPlot | Man page Source code |
| distSample | Man page Source code |
| distServer | Source code |
| distShiny | Man page Source code |
| driftPlot | Man page Source code |
| driftServer | Source code |
| explVar | Man page Source code |
| extractComb | Man page Source code |
| fR_boxplotUI | Source code |
| fR_distUI | Source code |
| featurePlot | Man page Source code |
| featureServer | Source code |
| fitServer | Source code |
| histFeatCategoryServer | Source code |
| histFeatServer | Source code |
| histFeature | Man page Source code |
| histFeatureCategory | Man page Source code |
| histSampleServer | Source code |
| hist_sample | Man page Source code |
| hist_sample_num | Man page Source code |
| hoeffDPlot | Man page Source code |
| hoeffDValues | Man page Source code |
| imputeAssay | Man page Source code |
| loadingsPlotServer | Source code |
| maServer | Source code |
| meanSdServer | Source code |
| measuredCategory | Man page Source code |
| missingValuesSE | Source code |
| modelMatrixServer | Source code |
| modelMatrixUIServer | Source code |
| mosaic | Man page Source code |
| mosaicSampleServer | Source code |
| normalizeAssay | Man page Source code |
| permuteExplVar | Man page Source code |
| plotCV | Man page Source code |
| plotPCALoadings | Man page Source code |
| plotPCAVar | Man page Source code |
| plotPCAVarPvalue | Man page Source code |
| sampleMeasuredMissingServer | Source code |
| samplesMeasuredMissing | Man page Source code |
| screePlotServer | Source code |
| selectAssaySE | Source code |
| selectAssayServer | Source code |
| selectFeatureSE | Source code |
| selectSampleSE | Source code |
| setsServer | Source code |
| shinyQC | Man page Source code |
| sidebar_DEUI | Source code |
| sidebar_assayUI | Source code |
| sidebar_excludeSampleServer | Source code |
| sidebar_excludeSampleUI | Source code |
| sidebar_imputationUI | Source code |
| sidebar_reportUI | Source code |
| sidebar_selectAssayUI | Source code |
| sumDistSample | Man page Source code |
| tP_DE_all | Source code |
| tP_ECDFUI | Source code |
| tP_NMDSUI | Source code |
| tP_PCAUI | Source code |
| tP_PCoAUI | Source code |
| tP_barplotMeasuredMissingSampleUI | Source code |
| tP_boxplotUI | Source code |
| tP_colDataUI | Source code |
| tP_contrastUI | Source code |
| tP_cvUI | Source code |
| tP_dimensionReduction_all | Source code |
| tP_distUI | Source code |
| tP_driftUI | Source code |
| tP_featureUI | Source code |
| tP_histFeatCategoryUI | Source code |
| tP_histFeatUI | Source code |
| tP_histSampleUI | Source code |
| tP_maUI | Source code |
| tP_meanSdUI | Source code |
| tP_measuredValues_all | Source code |
| tP_missingValues_all | Source code |
| tP_modelMatrixUI | Source code |
| tP_mosaicSampleUI | Source code |
| tP_samples_all | Source code |
| tP_setsUI | Source code |
| tP_tSNEUI | Source code |
| tP_topDEUI | Source code |
| tP_umapUI | Source code |
| tP_upSetUI | Source code |
| tP_values_all | Source code |
| tP_volcanoUI | Source code |
| tSNEUIServer | Source code |
| tag_keepAlive | Source code |
| tag_loadMessage | Source code |
| tblPCALoadings | Man page Source code |
| testResultServer | Source code |
| topDEUIServer | Source code |
| transformAssay | Man page Source code |
| umapUIServer | Source code |
| upSetServer | Source code |
| updateSE | Source code |
| upsetCategory | Man page Source code |
| validExprContrast | Source code |
| validExprContrastServer | Source code |
| validExprModelMatrix | Source code |
| validFormulaMMServer | Source code |
| volcanoPlot | Man page Source code |
| volcanoUIServer | Source code |
