hist_sample: Plot a histogram of the number of a category

In tnaake/MatrixQCvis: Shiny-based interactive data-quality exploration for omics data

Plot a histogram of the number of a category

Description

hist_sample plots the number of a category (e.g. sample types) as a histogram. It use the returned tbl from hist_sample_num.

Usage

hist_sample(tbl, category = "type")

Arguments

tbl	tbl as returned by hist_sample_num
category	character, x-axis label of the plot

Value

gg object from ggplot2

Examples

## create se
a <- matrix(seq_len(100), nrow = 10, ncol = 10, 
            dimnames = list(seq_len(10), paste("sample", seq_len(10))))
a[c(1, 5, 8), seq_len(5)] <- NA
set.seed(1)
a <- a + rnorm(100)
cD <- data.frame(name = colnames(a), type = c(rep("1", 4), rep("2", 6)))
rD <- data.frame(spectra = rownames(a))
se <- SummarizedExperiment::SummarizedExperiment(assay = a, 
    rowData = rD, colData = cD)

tbl <- hist_sample_num(se, category = "type")
hist_sample(tbl)

tnaake/MatrixQCvis documentation built on Nov. 4, 2024, 7:42 a.m.