View source: R/tab_samplesfeatures.R
hist_sample_num | R Documentation |
hist_sample_num
returns the number of a category
(e.g. sample types) as a tbl
.
The function will retrieve first the column category
in colData(se)
.
The function will return a tbl
containing the numerical
values of the quantities.
hist_sample_num(se, category = "type")
se |
|
category |
|
tbl
## create se
a <- matrix(seq_len(100), nrow = 10, ncol = 10,
dimnames = list(seq_len(10), paste("sample", seq_len(10))))
a[c(1, 5, 8), seq_len(5)] <- NA
set.seed(1)
a <- a + rnorm(100)
cD <- data.frame(name = colnames(a), type = c(rep("1", 4), rep("2", 6)))
rD <- data.frame(spectra = rownames(a))
se <- SummarizedExperiment::SummarizedExperiment(assay = a,
rowData = rD, colData = cD)
hist_sample_num(se, category = "type")
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