aba.wrapper: aba.wrapper - single function to query and plot the aba...

In tobyjohnson/gtx: Genetics ToolboX

Description

aba.wrapper - single function to query and plot the aba colocs

Usage

aba.wrapper(analysis_ids, hgncid, ensemblid, rsid, chrom, pos, pos_start,
  pos_end, impala = getOption("gtx.impala", NULL), ...)

Arguments

analysis_ids	ukbiobank analysis id(s), single string or vector.
hgncid	HGNC symbol. Single string or vector.
ensemblid	Ensembl gene ID. Single string or vector.
rsid	SNP rsid. Single string or vector.
chrom	chromosome - Used to define a specific region
pos	position that will have +/- surround for bounds to pull in colocs.
pos_start	start position - Used to define a specific region, overrides surround
pos_end	end position - Used to define a specific region, overrides surround
impala	[getOption("gtx.impala", NULL)] Implyr impala connection

Value

data.frame with the inputs used, all the data for each input, and default plots

Author(s)

Karsten Sieber [e-mail]

tobyjohnson/gtx documentation built on Aug. 30, 2019, 8:07 p.m.