API for tobyjohnson/gtx
Genetics ToolboX

Global functions
.onAttach	Source code
CLEO	Man page
Surv2	Man page Source code
XXgene.draw	Source code
aba.fill	Man page Source code
aba.flatten	Man page Source code
aba.int_coloc_plot	Man page Source code
aba.int_zoom1	Man page Source code
aba.int_zoom2	Man page Source code
aba.plot	Man page Source code
aba.query	Man page Source code
aba.save	Man page Source code
aba.wrapper	Man page Source code
aba.zoom	Man page Source code
abf.Wakefield	Man page Source code
abf.normal	Man page Source code
abf.t	Man page Source code
add_ssh_known_host	Man page Source code
adiponectin.scores	Man page
agtstats	Man page
align.snpdata.coding	Man page Source code
allelesAB	Man page Source code
alphaize	Source code
annot	Man page Source code
aoex1	Man page
as.snpdata	Man page Source code
axis.by.chr	Man page
big_copy_to	Man page Source code
binarise	Man page Source code
blockassoc	Man page Source code
blockstats	Man page Source code
blockstats.clm	Man page Source code
blockstats.coxph	Man page Source code
blockstats.glm	Man page Source code
blockstats.lm	Man page Source code
blockstats.negbin	Source code
bp.scores	Man page
cad.scores	Man page
chi2ncp	Man page
chi2power	Man page
clinex	Man page
clinical.derive	Man page Source code
clinical.import	Man page Source code
close_int_conn	Man page Source code
coeff.extract	Man page
coeff.extract.default	Man page
coloc	Man page Man page Source code
coloc.compute	Man page Source code
coloc.data	Source code
coloc.fast	Man page Source code
combine.moments2	Man page Source code
config_db	Man page Source code
config_tmp_write_db	Man page Source code
contrasting.rainbow	Man page
credset	Man page Source code
definitions.standard.IDSL	Man page
demographics	Man page Source code
demographics.Surv	Man page Source code
demographics.data.frame	Man page Source code
demographics.default	Man page Source code
demographics.factor	Man page Source code
demographics.logical	Man page Source code
demographics.numeric	Man page Source code
demographicsCheckBy	Source code
derivation.add	Man page Source code
derivations.standard	Man page
derivations.standard.IDSL	Man page
derive1	Source code
dose2geno	Source code
drop_impala_copy	Man page Source code
est.moments2	Man page Source code
extrange	Source code
find_qtl_bygene	Man page Source code
finitise	Man page Source code
fitmix	Man page Source code
fitmix.plot	Man page Source code
fitmix.r2	Man page Source code
fitmix.simulate	Man page Source code
fitmix1	Source code
fixNA	Man page Source code
fm_cleo	Source code
fm_cleo.data	Source code
fm_signal	Source code
fooo	Source code
fplot_disease	Source code
fplot_eqtl	Source code
fplot_search	Source code
fupower	Man page Source code
gclambda	Man page Source code
gencode14.UGT1A1	Man page
gene.annotate	Man page Source code
gene.draw	Man page
gene.label	Source code
gene.nearest	Man page Source code
getCallDetail	Source code
getDoseandLD	Source code
getResults	Source code
getchunks	Source code
gls.approx.logistic	Man page Source code
grade	Man page Source code
grs.filter.Qrs	Man page
grs.make.scores	Man page
grs.onesnp.apply	Man page
grs.plot	Man page Source code
grs.summary	Man page Source code
gtx	Man page
gtx-package	Man page
gtx.params	Man page
gtx.version	Man page
gtx_debug	Man page Source code
gtx_error	Man page Source code
gtx_fatal	Man page Source code
gtx_fatal_stop	Man page Source code
gtx_info	Man page Source code
gtx_warn	Man page Source code
gtxanalyses	Man page Source code
gtxanalysis_label	Source code
gtxanalysisdb	Source code
gtxcache	Man page Source code
gtxconnect	Source code
gtxdbcheck	Source code
gtxentity	Source code
gtxfilter	Source code
gtxfilter_label	Source code
gtxlabel	Source code
gtxlog	Source code
gtxpipe	Man page Source code
gtxregion	Man page Source code
gtxversion	Man page Source code
gtxwhat	Source code
gtxwhere	Man page Source code
gwas	Man page Source code
gwas2	Man page Source code
hapmap.read.haplotypes	Man page
hapmap.snpdata	Man page Source code
height.scores	Man page
ideas_get_states	Man page Source code
ideas_gwas_plot	Man page Source code
ideas_gwas_summarize	Man page Source code
ideas_lasso	Man page Source code
ideas_loci_summarize	Man page Source code
ideas_make	Man page Source code
ideas_predict	Man page Source code
ideas_preload_states	Man page Source code
ideas_sum_pp_cross_cell_types	Man page Source code
ideas_wrapper	Man page Source code
ile	Man page
impala_copy_to	Man page Source code
int_coloc_pics_lite	Man page Source code
int_fastDoCall	Man page Source code
int_harmonize_pics	Man page Source code
int_sbind	Man page Source code
internal.kmplot	Source code
internal.otplot	Source code
internal.qtplot	Source code
internal.waterfall	Source code
is.moments2	Man page Source code
is.snpdata	Man page Source code
kmplot	Man page Source code
kmplot.Surv	Man page Source code
kmplot.character	Man page Source code
label_variant	Source code
landmark	Man page Source code
legendgrid	Source code
lipid.cad.scores	Man page
lipid.scores	Man page
liver.scores	Man page
lm.moments2	Man page Source code
magic.scores	Man page
make.moments2	Man page Source code
manhattan	Man page Source code
meta	Source code
mincover	Man page Source code
mlog10p	Man page Source code
moments2	Man page
mps.asymptotic	Source code
mps.driver	Man page Source code
mps.driver1	Man page Source code
mps.summary	Man page Source code
mtext.fit	Source code
mthfr.params	Man page
mthfrex	Man page
multicoloc	Man page Source code
multicoloc.data	Source code
multicoloc2	Man page
multicoloc2.data	Source code
multimatch	Man page Source code
multipheno	Source code
multipheno.OBrien	Man page Source code
multipheno.T2	Man page Source code
my.usubjid	Source code
n.extract	Man page
n.extract.default	Man page
n.extract.lm	Man page
norm1	Man page Source code
order_chrom	Source code
otplot	Man page Source code
otplot.character	Man page Source code
otplot.factor	Man page Source code
otplot.numeric	Man page Source code
padata.permodelgroup	Source code
parse.snps	Man page Source code
pcaplot	Man page Source code
pgx.endpoints	Man page Source code
pgx.exposure	Man page Source code
pgx.trtreat	Man page Source code
phewas	Man page Source code
phewas.data	Man page
phewas.qq	Man page
piccolo	Man page Source code
pics_calc	Man page Source code
plantation	Man page Source code
plotcol.by.chr	Man page
plotpos.by.chr	Man page
positivise	Man page Source code
postanalysis.pipeline	Source code
prettye	Man page Source code
prettypc	Man page Source code
prune.distance	Man page Source code
prune.genes	Man page Source code
qq10	Man page
qq10.envelope	Man page
qq10.new	Man page
qq10.points	Man page
qtplot	Man page Source code
qtplot.character	Man page Source code
qtplot.numeric	Man page Source code
rank_chrom	Source code
read.snpdata.impute	Man page Source code
read.snpdata.mach	Man page Source code
read.snpdata.minimac	Man page Source code
read.snpdata.plink	Man page Source code
recomb.draw	Source code
regionplot	Man page Source code
regionplot.data	Source code
regionplot.genedraw	Source code
regionplot.highlight	Source code
regionplot.multiP	Source code
regionplot.new	Man page Source code
regionplot.points	Source code
regionplot.recombination	Source code
regionplot.region	Man page
remap.q2t	Man page Source code
replaceNA	Man page Source code
retrieve_data	Man page Source code
run.blat	Source code
safe	Man page Source code
sanitise.whitespace	Man page Source code
sanitize	Source code
sanitize1	Source code
snpdata	Man page
snphwe	Man page Source code
snphweCounts	Man page
snps.BRCA1	Man page
sqlWrapper	Source code
sql_where_x	Source code
ssm.CC	Man page Source code
ssm.CCpopulation	Man page Source code
ssm.CCsample	Man page Source code
ssm.CoxPH	Man page Source code
ssm.GLM	Man page Source code
ssm.LM	Man page Source code
ssm.QT	Man page Source code
ssm.Surv	Man page Source code
ssm.null	Man page Source code
stepdown.moments2	Man page Source code
stepup.moments2	Man page Source code
subsequences	Source code
summary.snpdata	Man page Source code
t2d.scores	Man page
t2dex	Man page
test.extract	Man page Source code
test.extract.coxph	Man page Source code
test.extract.glm	Man page Source code
test.extract.htest	Man page Source code
test.extract.lm	Man page Source code
test.extract.survdiff	Man page Source code
test.subsample	Man page Source code
text2factor	Man page Source code
textgrid	Man page Source code
tokenise.whitespace	Man page Source code
trial.params	Man page
twopq	Man page Source code
validate_impala	Man page Source code
validate_module_input	Man page Source code
validate_sc	Man page Source code
valuesof	Man page Source code
waterfall	Man page Source code
waterfall.character	Man page Source code
waterfall.numeric	Man page Source code
where_from	Source code
whoami	Man page Source code
zise	Man page