ideas_make: Ideas make

In tobyjohnson/gtx: Genetics ToolboX

Description

Convert GWAS summary stats into posterior probabilities that can be used by IDEAS predict.

Usage

ideas_make(analysis, pval_le = 5e-08, chrom, pos, case_emac_ge = 25,
  dbc = getOption("gtx.dbConnection", NULL))

Arguments

analysis	GWAS analysis id.
pval_le	[5e-8] Max pval for GWAS
chrom	Chromosome to query
pos	Position
case_emac_ge	[25]

Value

Table of GWAS loci with posteriors for ideas_predict

Author(s)

Karsten Sieber [e-mail]

Karl Guo [e-mail]

See Also

Other ideas_predict: ideas_gwas_plot, ideas_gwas_summarize, ideas_loci_summarize, ideas_predict, ideas_preload_states, ideas_wrapper

tobyjohnson/gtx documentation built on Aug. 30, 2019, 8:07 p.m.